RetrogeneDB ID: retro_mmur_7

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_13486:3138..4911(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000003132
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000004702
• Aliases: None
• Description: None

Sequence

>retro_mmur_7
GGCGACGCAGCCAAGAGCCAGGCTGCCCTGAACCCGCACAACACGGTGTTCGACGCCAAGCGGCTGATTGGGCGCAAGTT
CACGGACGCGACGGTGCAGGCGGACATGAAGCACTGGCCCTTCCAGGTGGTGAGCGACGGCGGCAAGCCCAAGGTGCGGG
TGTCCTGCCGCGGGGAGGACAAGACGTTCTGCCCCGAGGAGATATCGTCCATGGTGCTGAGCAAGATGAAGGAGACGGCG
GAGGCGTACCTGGGCCAGCCTGTGAGGCACGCTGTGATCACGGTGCCCGCCTACTTCAACGACTCGCAGCGCCAGGCTAC
CAAGGACGCAGGTGCCATCGCAGGGCTCAACGTGCTAAGGATCATCAACGAGCCCACGGCGGCCGCCATCGCCTACGGGC
TGGACCGGCGGGGTGCCGGAGAGCGCAACGTGCTCATTTTTGACCTGGGTGGGGGCACCTTCGATGTGTCGGTACTCTCT
ATCGACGCCGGTGTCTTTGAGGTGAAGGCCACCGCTGGAGACACCCACCTGGGTGGAGAGGACTTCGACAACCGGCTGGT
GAGCCACTTCGTGGAGGAGTTTCGGCGGAAGCATGGGAAAGACGTGAGCGGGAACAAGCGGGCCCTGCGCAGGCTGCGCA
CAGCCTGTGAGCGCGCCAAGCGCACCCTGTCCTCCAGCACCCAAGCCACCCTGGAGATCGACTCCCTGTTCGAGGGTGTG
GACTTCTACACGTCCATCACTCGTGCCCGCTTTGAGGAACTGTGCTCAGACCTCTTCCGCAGCACCCTGGAGCCTGTGGA
GAAGGCCCTGCGGGATGCCAAGCTGGACAAGACCCAGATCCACGATGTCGTCCTGGTTGGGGGCTCCACCCGCATCCCTA
AGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAGGGAGCTGAACAAGAGCATCAACCCTGATGAGGCCGTGGCCTAT
GGGGCTGCTGTACAGGCCGCGGTGTTGATGGGGGACAAGTGCGAGAAAGTACAGGATCTCCTGCTGTTGGATGTGGCTCC
CCTGTCCCTGGGGCTGGAGACGGCAGGTGGGGTGATGACTACGCTGATCCAGAGGAATGCCACTATTCCCACCAAGCAGA
CCCAGACCTTCACCACTTACTCCGACAACCAGCCTGGGGTCCTGATCCAAGTGTATGAGGGTGAGAGGGCCATGACTAGG
GACAACAACCTGCTGGGGCGCTTTGAACTCAGTGGCATCCCTCCTGCCCCACGTGGAGTCCCTCAGATCGAAGTGACCTT
TGACATTGATGCTAATGGCATCCTCAGTGTGATGGCCACTGACAGGAGCACAGGCAAGGCCAACAAGATCACCATCACCA
ATGACAAGGGCCGGCTAAGCAAGGAGGAGGTGGAGAGGATGGTTCGTGAGGCTGAGCAGTACAAGGCTGAAGATGAGGCC
CAGAGGGACAGGGTGGCTGCCAAAAACTCCCTGGAGGCCTATGTCTTCCATGTGAAGGGATCTTTGCAAGAGGAAAGCAT
GAAGGACAAGATTCCTGAAGAAGACAGGCGCAAAGTGCAAGACAAGTGTCAGGAAGTCCTTGCCTGGCTGGAGCACAACC
AGTTGGCAGAGAAGGAGGAGTATGAGCATCAGAAGAAGGAGCTGGAGCAAATCTGTCGCCCCATCTTCTCTAGGCTCTAT
GGAGGGCCTGGTGTCCCTGGGGGCAGCAGCTGTGGGTCTCAAGCCCGGCAGGGAAACCCCAGTACCGGTCCCATCATTGA
GGAGGTTGATTGA

Alignment

ORF - retro_mmur_7 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.95 %
• Parental protein coverage: 78.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVS
          V..AV.TVPAYFNDSQRQATKDAG.IAGLNVLRIINEPTAAAIAYGLD.....ERNVLIFDLGGGTFDVS
Retrocopy VRHAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDRRGAGERNVLIFDLGGGTFDVS

Parental  ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST
          .L.I..G.FEVK.TAGDTHLGGEDFDNR.V.HF..EF.RKH.KD.S.NKRA.RRLRTACERAKRTLSSST
Retrocopy VLSIDAGVFEVKATAGDTHLGGEDFDNRLVSHFVEEFRRKHGKDVSGNKRALRRLRTACERAKRTLSSST

Parental  QASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQK
          QA..EIDSL.EG.DFYTSITRARFEEL..DLFR.TL.PVEKALRDAKLDK.QIHD.VLVGGSTRIPK.QK
Retrocopy QATLEIDSLFEGVDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKTQIHDVVLVGGSTRIPKVQK

Parental  LLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT
          LLQDFFNG.ELNKSINPDEAVAYGAAVQAA.L.GDK.E.VQDLLLLDV.PLSLG.ETAGGVMT.LI.RN.
Retrocopy LLQDFFNGRELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDLLLLDVAPLSLGLETAGGVMTTLIQRNA

Parental  TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV
          TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT.DNNLLG.FEL.GIPPAPRGVPQIEVTFDIDANGIL.V
Retrocopy TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILSV

Parental  SAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKL
          .A.D.STGK.NKITITNDKGRLSKE..ERMV.EAE.YKAEDE.QRD.V..KNSLE.Y.F..K.....E..
Retrocopy MATDRSTGKANKITITNDKGRLSKEEVERMVREAEQYKAEDEAQRDRVAAKNSLEAYVFHVKGSLQEESM

Parental  QGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGMPGG
          ..KI..ED..K..DKC.E...WL..NQ.AEKEE.EHQ.KELE..C.PI...LY....G.PG..PGG...G
Retrocopy KDKIPEEDRRKVQDKCQEVLAWLEHNQLAEKEEYEHQKKELEQICRPIFSRLY----GGPG-VPGGSSCG

Parental  FPGGGAPPSGGASSGPTIEEVD
          .......PS.G....P.IEEVD
Retrocopy SQARQGNPSTG----PIIEEVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_7 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_7 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000012704	1 retrocopy	retro_eeur_8,
Microcebus murinus	ENSMICG00000004702	1 retrocopy	retro_mmur_7 ,
Sorex araneus	ENSSARG00000000161	1 retrocopy	retro_sara_31,
Tupaia belangeri	ENSTBEG00000011602	8 retrocopies	retro_tbel_1764, retro_tbel_344, retro_tbel_3488, retro_tbel_3524, retro_tbel_4348, retro_tbel_4412, retro_tbel_4490, retro_tbel_471,