RetrogeneDB ID: retro_mmur_740

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_546:158643..159201(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GPX3
• Ensembl ID: ENSMICG00000000660
• Aliases: None
• Description: glutathione peroxidase 3 (plasma) [Source:HGNC Symbol;Acc:4555]

Sequence

>retro_mmur_740
AGGACGGACTGCAATGAAAATGTGACAGGTACCGTCTGTGAGGATGGAGCCCTCAGCCTTGATGGCGAGTACATGCAGTT
CAAGCGGCGTGCAGGCAAGCGTGTCCTCCCCGTCAATGCGCCGCCTGTTGAGGCTTGGCAGCTCAGTGTCCTGAACTGAA
TGCCCTACAGGAGGAGCTGAGGAATTTTGGTGTCATTGTGTCGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAG
GAAAGAACTCAGAAACCCTTTCTGGGCTCAAGTATGTGGATGCAGGTGGAGGCTTTGTCCCCAGTTTCCTGCTCTTTGAA
AAAGGGGGTGTGAATGGAGAAAATGAACAAAAGGTCTTTGTTTTCCTTAAGAACTCCTGCCCTCTGACCACTGATCCTTT
GGGCTCATCGAGCCAACTCTTCTGGGAGCCCTTGAGGTCCCTGACATCTGCTGGAACTTTGAGAAGTCCCCGGTGGGGCC
CACTGGAGTCCTGCCATGCGCTGGCTCCACCGGGCTCCCGTCAGCACAGTCCCATCAGACGTCCCAGAGTACATGAAG

Alignment

ORF - retro_mmur_740 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.21 %
• Parental protein coverage: 84.3 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KTDCHGGVSGTIYEYGALTIDGDEYIPFKQYAGKYVLFVNV-ASFUGLTGQYVELNALQEELAPFGLVIL
          .TDC...V.GT..E.GAL..DG.EY..FK..AGK.VL.VN..A...GL..Q..ELNALQEEL..FG....
Retrocopy RTDCNENVTGTVCEDGALSLDG-EYMQFKRRAGKRVLPVNA<AAC*GLAAQCPELNALQEELRNFGVIVS

Parental  GFPCNQFGKQEPGDNSEILPTIKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPG
          GFPCNQFGKQEPG.NSE.L...KYV..GGGFVP.F.LFEKG.VNGE.EQK...FLKNSCP.T...LGS..
Retrocopy GFPCNQFGKQEPGKNSETLSGLKYVDAGGGFVPSFLLFEKGGVNGENEQKVFVFLKNSCPLTTDPLGSSS

Parental  RLFWEPMK-IHDIRWNFEKFLVGPDGI-PVMRWHHRTTISNVKIDILSYMR
          .LFWEP.....DI.WNFEK..VGP.G..P.MRW.HR...S.V..D...YM.
Retrocopy QLFWEPLR<VPDICWNFEKSPVGPTGV<PAMRWLHRAPVSTVPSDVPEYMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_740 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_740 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000000660	1 retrocopy	retro_mmur_740 ,
Sarcophilus harrisii	ENSSHAG00000001286	1 retrocopy	retro_shar_199,