RetrogeneDB ID: retro_mmur_746

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_582:151574..151824(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM162B
• Ensembl ID: ENSMICG00000014555
• Aliases: None
• Description: family with sequence similarity 162, member B [Source:HGNC Symbol;Acc:21549]

Sequence

>retro_mmur_746
ATTCTGGTGTGAACTGGGTGTTTCAAATCAGTGAAGCCAATCATGCCAGAAGTGAGAGATGCTACAAGAAACAAAGCTTG
AGTGAAAGCTTGTTACATAATTATTGGACTCAACACATATTGCCTGTTATGCAGTGATAGCATCAGACAAAAGGGATGCA
GAATGACATGAATACTTAACTAGTTGGAACATGGCAAAGAAAGCTATGTGGTATAAAGAAGCTGCATTGGCTGCACAGGC
TAAGGCTAAA

Alignment

ORF - retro_mmur_746 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.91 %
• Parental protein coverage: 58.78 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ILLWTGRFKSMEEIPPQVPPEMIDAARNKARVKVCYIMIGL-TIIACFAVIASAKRAVERHESLTSWNLA
          IL..TG.FKS.........PE..DA.RNKA.VK.CYI.IGL.T.IAC.AVIAS.KR..E.HE.LTSWN.A
Retrocopy ILV*TGCFKSVKP----IMPEVRDATRNKA*VKACYIIIGL>THIACYAVIASDKRDAE*HEYLTSWNMA

Parental  KKAKWREEAALAAQAKAK
          KKA.W..EAALAAQAKAK
Retrocopy KKAMWYKEAALAAQAKAK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_746 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_746 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000183807	2 retrocopies	retro_hsap_3744, retro_hsap_901,
Gorilla gorilla	ENSGGOG00000002045	1 retrocopy	retro_ggor_728,
Microcebus murinus	ENSMICG00000014555	1 retrocopy	retro_mmur_746 ,
Mus musculus	ENSMUSG00000019909	1 retrocopy	retro_mmus_2292,
Pan troglodytes	ENSPTRG00000018538	4 retrocopies	retro_ptro_2541, retro_ptro_2542, retro_ptro_2994, retro_ptro_621,