RetrogeneDB ID: retro_mmur_751

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_610:147041..147431(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CRLS1
• Ensembl ID: ENSMICG00000011666
• Aliases: None
• Description: cardiolipin synthase 1 [Source:HGNC Symbol;Acc:16148]

Sequence

>retro_mmur_751
TTATTGAAGAAGATTTTAATATGCACTAGGAGTTTTTGCTTTAGCTGGGCTAACTGATTTGTTCCACTTACTTATATGAT
AATTTCAAGAGATGTAATGTTGATTGCTGCTGTTTTTTATGTCAGATATCGAACTCTTCCAACACCGCGAACACTTGCTA
AGTATTTCAACCCTTGCTATGCTACTGCTAGGTTAAAACCAACATTCATCAGCAAGGTAAACACAGCAGTCCAGTTAATC
TTGGTGGCAGCTTCTTTGGCAGCTCCAGTTTTCAATTATTCTGACAGCATTTATCTTCAGATGCTGTGGTGTTGTACAGC
CCTCACCACAGCTGCATCAGCTTATAGTTATTATCATTATGGTCGGAAAACTATTCAGGTGATAAAGGGC

Alignment

ORF - retro_mmur_751 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.02 %
• Parental protein coverage: 54.58 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LADKILISILYVSLTYADLIPVPLTYMIISRDVLLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF
          L..KILI.........A....VPLTYMIISRDV.LIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF
Retrocopy LLKKILICTRSFCFSWAN*F-VPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF

Parental  ISKVNTAVQLILVAASLAAPVFNYSDSIYLQMLWCFTALTTAASAYSYYHYGRKTIQVIKG
          ISKVNTAVQLILVAASLAAPVFNYSDSIYLQMLWC.TALTTAASAYSYYHYGRKTIQVIKG
Retrocopy ISKVNTAVQLILVAASLAAPVFNYSDSIYLQMLWCCTALTTAASAYSYYHYGRKTIQVIKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_751 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_751 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010596	1 retrocopy	retro_amel_1758,
Bos taurus	ENSBTAG00000000065	1 retrocopy	retro_btau_1167,
Canis familiaris	ENSCAFG00000005934	1 retrocopy	retro_cfam_1002,
Equus caballus	ENSECAG00000023869	2 retrocopies	retro_ecab_247, retro_ecab_930,
Felis catus	ENSFCAG00000023647	1 retrocopy	retro_fcat_1393,
Microcebus murinus	ENSMICG00000011666	1 retrocopy	retro_mmur_751 ,
Mustela putorius furo	ENSMPUG00000006349	1 retrocopy	retro_mputfur_1021,
Rattus norvegicus	ENSRNOG00000021273	3 retrocopies	retro_rnor_2865, retro_rnor_2866, retro_rnor_2977,