RetrogeneDB ID: retro_mmur_782

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_823:104843..105265(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UCK1
• Ensembl ID: ENSMICG00000004903
• Aliases: None
• Description: uridine-cytidine kinase 1 [Source:HGNC Symbol;Acc:14859]

Sequence

>retro_mmur_782
AAGTCGACTGTGTGTAAGTTCATGGAGCTGCTGGGACAGAACGAAGTGGACCACCGGCAGCACAAGTTGGTCATCCTAAG
CCAAGACAGGTTCTATAAGGTCCTGACAGCAGAACAGAAGGCTAAATCCTTGAAGGGACAGTACAATTTTGACCATCCAG
ACACTTTTGATAATGATTTGATGCACAGGACTCTGAAAAACATCTTGGAGGGCAAAACTCTCAAAGTTCCAACCTATGAT
TTGTGATCCACTCAAGGTTACCAGAGACCACAGTGGTCTACCCTGTGGAAGTGGTTCTGTTTGAGGGCATCTTGGTGTTC
TATAGCCAGGAGATCTGGGACATGTTTCACATGCACCTCTCCATAGACACAGACTCCAAAGTCAGGCTCTCTCAAAGAGT
TCTCCTGGACATGCACTGAGGA

Alignment

ORF - retro_mmur_782 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.92 %
• Parental protein coverage: 55.69 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV
          .STVC.K.MELLGQNEVDHRQ.KLVILSQDRFYKVLTAEQKAK.LKGQYNFDHPD.FDNDLMHRTLKNI.
Retrocopy KSTVC-KFMELLGQNEVDHRQHKLVILSQDRFYKVLTAEQKAKSLKGQYNFDHPDTFDNDLMHRTLKNIL

Parental  EGKTVEVPTYD-FVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV
          EGKT..VPTYD.FV.HSRLPETTVVYP..VVLFEGILVFYSQEI.DMFH..L..DTDS.VRLS.RVL.D.
Retrocopy EGKTLKVPTYD<FVIHSRLPETTVVYPVEVVLFEGILVFYSQEIWDMFHMHLSIDTDSKVRLSQRVLLDM

Parental  HRG
          H.G
Retrocopy H*G

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_782 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_782 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000004903	1 retrocopy	retro_mmur_782 ,
Mus musculus	ENSMUSG00000002550	2 retrocopies	retro_mmus_2869, retro_mmus_3145,
Otolemur garnettii	ENSOGAG00000028797	1 retrocopy	retro_ogar_2882,