RetrogeneDB ID: | retro_mmur_787 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_863:4249..4577(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BRK1 | ||
| Ensembl ID: | ENSMICG00000002361 | ||
| Aliases: | None | ||
| Description: | BRICK1, SCAR/WAVE actin-nucleating complex subunit [Source:HGNC Symbol;Acc:23057] |
Retrocopy-Parental alignment summary:
>retro_mmur_787
GCAGCAGCCATGGCAGGCCAAGAGGACCCGGTGCCCCGGGAGATTCACCAGGACTGAGCGAACCGCGGGTACATCGAGGT
CATCACCAGCAGCATCAAGAAGATCTCGGACTTTCTCAACTCGTTCGATTTGTTTTGTCGTTCAAGACTCGCAACGCTAA
ACGAGAAATTGACAGCCCTTGAACGGAGAATAGAGTACATCGAAGCACAGGTGACAAAAGGTGAGACACTCACCCAGAAG
TATGCCATGCTGCTGCTGGGAAGTTGCTTGACAGAAAGCAGGCCCTGTGGGAAAGGCCCCAGCAACCTTCAGCTCCCTCC
TTTCTCCT
ORF - retro_mmur_787 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 83.64 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | AAAMAGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEAR |
| AAAMAGQEDPV.REIHQD.ANR.YIEVITSSIKKI.DFLNSFD..CRSRLATLNEKLTALERRIEYIEA. | |
| Retrocopy | AAAMAGQEDPVPREIHQD*ANRGYIEVITSSIKKISDFLNSFDLFCRSRLATLNEKLTALERRIEYIEAQ |
| Parental | VTKGETLRSMPC-CC-WEVA-QKAGPV-KAPAAFSSFLSP |
| VTKGETL......CC.WEVA.QKAGPV.KAPA.FSS.LSP | |
| Retrocopy | VTKGETLTQKYA>CCCWEVA*QKAGPVGKAPATFSSLLSP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_787 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_787 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000002361 | 1 retrocopy |
retro_mmur_787 ,
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