RetrogeneDB ID: retro_mmur_82

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1145:170350..170853(-)
• Located in intron of: ENSMICG00000005913

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HSD17B14
• Ensembl ID: ENSMICG00000013297
• Aliases: None
• Description: hydroxysteroid (17-beta) dehydrogenase 14 [Source:HGNC Symbol;Acc:23238]

Sequence

>retro_mmur_82
ATCTCCGAGACCATCCGCCAGTTCAGCCGCCTGGACTATGTGGTCAACAACACCGGTCACCACCCAGTGAACAGCGGCTC
ATGGAGACCACCACCAACGGTTTTTGCCAGCTGCTGGAGCTGAACCTGCTGGGGGTTTACAGCGTGACCAAGTACACCCT
TCCCCACCTGCGGAAGACCCAGGGGAACAGCATCAACATCTCCAGCCTGGTAGCGACGATTGGCCAGTCCCAGTCAATTC
CCTATGTGGCCACCAAGGGGGCAGTAACAGCCATGACCAATGCCTTGGCCCTGGATGAGAGTCAATACAGTGTCCAAGTC
AACTGCATCTCCCCAGGAAACATCTGGACCCCACTATGGGAGGAGTTGGCAGCCTCAACACCTGACCCCAGGGCCACAGT
CCTAGAGGGCACCTTGGCCCAGCCCGCTGAGGTGGGGGCTGCGGCAGCGTTCCTGGACTCTGGAGCTACCTTCTGCACAG
GCATCAACCTGTTTTTGATGGGC

Alignment

ORF - retro_mmur_82 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.92 %
• Parental protein coverage: 62.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ISETIRQFGRLDCVVNNAGYHPV-DQRLTETTTDGFRQLLELNLLGVYRVTKYALPHLRKTQGNVINISS
          ISETIRQF.RLD.VVNN.G.HPV..QRL.ETTT.GF.QLLELNLLGVY.VTKY.LPHLRKTQGN.INISS
Retrocopy ISETIRQFSRLDYVVNNTGHHPV<EQRLMETTTNGFCQLLELNLLGVYSVTKYTLPHLRKTQGNSINISS

Parental  LVAAIGQSQSVSYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWTPLWEELAASTPDPRATVLEGTL
          LVA.IGQSQS..YVATKGAVTAMT.ALALDESQY.V.VNCISPGNIWTPLWEELAASTPDPRATVLEGTL
Retrocopy LVATIGQSQSIPYVATKGAVTAMTNALALDESQYSVQVNCISPGNIWTPLWEELAASTPDPRATVLEGTL

Parental  AQPMGRMGQPAEVGAAAVFLASGATFCTG
          AQP.......A.....A.F......F..G
Retrocopy AQPAEVGAAAAFLDSGATFCTGINLFLMG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_82 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_82 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013297	1 retrocopy	retro_mmur_82 ,