RetrogeneDB ID: retro_mmur_871

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_11570:43886..45338(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000007110
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: KIAA1524
• Ensembl ID: ENSMICG00000000230
• Aliases: None
• Description: KIAA1524 [Source:HGNC Symbol;Acc:29302]

Sequence

>retro_mmur_871
CTTCTGCTGCCTACAATCCTTGATCAGCTTCAGTTCACAGGACAAAATCTAGATGAAGCCTTAATAAGAAAAAAATGTGA
AAGGATGGTCAGGTCCATTGAAGTTTTGTCAACTCTGTGTGGAGATGATACTCTGAAAATGCATATTGCAAAAATTCTGA
CTACTATGAAATGTACCACTCTGATAGAACAACAATTTACATATGGCAAGATTGACCTGGGGTTTGGAACAAAGGTAGCA
GATTCCGAATTATGCAAACTTGCTGCTGATGTGGTTTTGAAAACTCTCAATTTGATGAACAAACTTAAACAGTTGGTTCC
TGGTATGGAAGTAAGCTTCTACAAAAACCTTCAGGATCCACATTTGATTACCCCTTTGGCTTTTGCTTTAACATCAGATA
ATAGAGAACAAGTGCAGTCTGGACTGGGAATATTATTGGAAGTTGCTCCACTGCCAGATTTCCCTGCTTTAGTACTTGGA
GAAAGTATAGCAGCGAACAATGCCTATAGACAACAGGAAACAGAACATATGCCCAGAAGAGTTCCTTTGCAATCATTAAA
TCACAGTTTTCCAACATCAGTAAAATGTTTAACTTCTCCTCTTTTGAAAGATAGCATTCCTGGATTGAACATTGAGGAAT
TAATAGAAAAACTTCAATCAGGAGTGGTGGTAAAGGACCAGATTAATGATGTGAGAATATCTGACATAATGGATGTATAT
GAGATGAAGCTGTCCACATTAGCTTCCAAAGAAAGCAGGCTACAAGATCTCTTGGAAGCAAAAGCTCTAGCCCTTGCCCA
GGCAGATAGACTGATTGCTCAGTATTGCTGCCAAAGAACTCAAGCTGAGACAGAGGCATGGACACTTGCTGGTATGTTGA
GAGAAGTTGAGAGAAAAAATGAAGAACTTAGTGTTTTGCTGAAGTCACAACAGACTGAATCAGAGAGAGCCCAGAGTGAT
ATTGAACATCTCTTTCAACATAATAGAAAGTTAGAGTCTGTGGCTGAAGAACATGAAATATTGACAAAGTCTTACGTGGA
ACTTCTTCAGAGAAATGAAACTACTGAAAAGAAGAATAAAGATTTACAGATCACATGTGATTCTCTGAATAAACAAATTG
AGACAGTGAAAAAGTTGAATGAGTCACTCAAGCAACAAAATGAAAAAACTGTTGCTCAATTAATAGAGAAAGAAGAACAG
AAAAAAGAAGTACAGAACCAGCTAGTAGACAGAGAATATAAACTAACAAATTTGCATCAAAAATCAAAAGTACAAGAAGA
AAAGATTAAAGTTTTACAAAAGGAGAGGGAAGATAAGGAAGAAACTATTGATATCCTTAGAAAAGAATTAAGCATAACAG
AACAAATAAGAAAAGAGTTGAGCATTAAGGCTTCCTCACTAGAGGTTCAAAAGGCACAATTAGAAGGTCGTTTGGAGGAG
AAAGAGTCCTTG

Alignment

ORF - retro_mmur_871 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.04 %
• Parental protein coverage: 55.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LLLPTILD-LKYKEQNLDEALRRKRKERMVRSIEVLLNILYYDTLKMHIAKILTTMKCTTLIEQQFTYGK
          LLLPTILD.L....QNLDEAL.RK..ERMVRSIEVL......DTLKMHIAKILTTMKCTTLIEQQFTYGK
Retrocopy LLLPTILDQLQFTGQNLDEALIRKKCERMVRSIEVLSTLCGDDTLKMHIAKILTTMKCTTLIEQQFTYGK

Parental  IDLGFGTKVADSELCKLAADVVLKTLNLMNKLKQLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQS
          IDLGFGTKVADSELCKLAADVVLKTLNLMNKLKQLVPGMEVSFYK.LQDP.LITPLAFALTSDNREQVQS
Retrocopy IDLGFGTKVADSELCKLAADVVLKTLNLMNKLKQLVPGMEVSFYKNLQDPHLITPLAFALTSDNREQVQS

Parental  GLGILLEAAPLPDFPALVLGESIAANNAYRQQETEHMPRRVPLQSLNHSFPTSVKCLTPPLLKDSIPGLN
          GLGILLE.APLPDFPALVLGESIAANNAYRQQETEHMPRRVPLQSLNHSFPTSVKCLT.PLLKDSIPGLN
Retrocopy GLGILLEVAPLPDFPALVLGESIAANNAYRQQETEHMPRRVPLQSLNHSFPTSVKCLTSPLLKDSIPGLN

Parental  IEELIEKLQSGVVVKDQINDVRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRT
          IEELIEKLQSGVVVKDQINDVRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQY.CQRT
Retrocopy IEELIEKLQSGVVVKDQINDVRISDIMDVYEMKLSTLASKESRLQDLLEAKALALAQADRLIAQYCCQRT

Parental  QAETEARTLAGMLREVERKNEELSVLLKSQQTESERAQSDIEQLFQHNRKLESVAEEHEILTKSYMELLQ
          QAETEA.TLAGMLREVERKNEELSVLLKSQQTESERAQSDIE.LFQHNRKLESVAEEHEILTKSY.ELLQ
Retrocopy QAETEAWTLAGMLREVERKNEELSVLLKSQQTESERAQSDIEHLFQHNRKLESVAEEHEILTKSYVELLQ

Parental  RNETTEKKNKDLQITCDSLNKQIETVKKLNESLKQQNEKTVAQLIEKEEQKKEVQNQLVDKEYKLTNLHQ
          RNETTEKKNKDLQITCDSLNKQIETVKKLNESLKQQNEKTVAQLIEKEEQKKEVQNQLVD.EYKLTNLHQ
Retrocopy RNETTEKKNKDLQITCDSLNKQIETVKKLNESLKQQNEKTVAQLIEKEEQKKEVQNQLVDREYKLTNLHQ

Parental  KSKVQEEKIKVLQKEREDKEETIDILRKELSRTEQIRKELSIKASSLEVQKAQLEGRLEEKESL
          KSKVQEEKIKVLQKEREDKEETIDILRKELS.TEQIRKELSIKASSLEVQKAQLEGRLEEKESL
Retrocopy KSKVQEEKIKVLQKEREDKEETIDILRKELSITEQIRKELSIKASSLEVQKAQLEGRLEEKESL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_871 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_871 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000000230	1 retrocopy	retro_mmur_871 ,