RetrogeneDB ID: retro_mmur_91

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_12:3776..4296(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PNPO
• Ensembl ID: ENSMICG00000014065
• Aliases: None
• Description: pyridoxamine 5'-phosphate oxidase [Source:HGNC Symbol;Acc:30260]

Sequence

>retro_mmur_91
GAGGGAAAACCCTCTGCCCGCATGTTGCCGCTGAAGGGCTTTGGCAAGGATGGGTTCTGCTTCTTCACTAACTTCGAGAG
TTGAAAAGGAAAAGAGCTGGACTCTAATCCCTTTGCTTCTCTTGTCTTCTACTGGGAGCCCCTTAACCGTCAGGTGCGTG
TGGAAGGCCCTGTGAAGAAGCTGCCTGAGGAGGAGGCTGAGTGCTACTTCCCCTCTCGCCCCAAGAGCAGCCAGATTGGG
GCTGCGGTCAGTCACCAGAGTTCTGTGATCCCTGATCAGGAGTGTCTGAGAAACAAAAACGAGGAACTGGGGCAGCTCTA
CCAAGACCAAGAAGTGCCTAAGCCAAAATACTGGGGTGGCTACATCCTGCACCCACAGGGGATGGAGTTCTGGCAAGGCC
AAACCAACCGCCTGCATGACCGCATCGTCCTTCGGGCGAGGCCTCTCAGTAGGAGATTGCCCTCTGGGGCCCATGACCCA
CCGCGGGGAGGAAGACTGGCTCTATGAGAGACTGGCCCCT

Alignment

ORF - retro_mmur_91 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.53 %
• Parental protein coverage: 66.28 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYF
          .GKPSARML.LKGFGKDGF.FFTNFES.KGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYF
Retrocopy EGKPSARMLPLKGFGKDGFCFFTNFES*KGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYF

Parental  HSRPKSSQIGAVVSHQSSVIPDREYLRNKNEELGQLYQDQEVPKPKYWGGYILYPQVMEFWQGQTNRLHD
          .SRPKSSQIGA.VSHQSSVIPD.E.LRNKNEELGQLYQDQEVPKPKYWGGYIL.PQ.MEFWQGQTNRLHD
Retrocopy PSRPKSSQIGAAVSHQSSVIPDQECLRNKNEELGQLYQDQEVPKPKYWGGYILHPQGMEFWQGQTNRLHD

Parental  RIVFR-RGLSVGDSPLGPMTHRGEEDWLYERLAP
          RIV.R.RGLSVGD.PLGPMTHRGEEDWLYERLAP
Retrocopy RIVLR>RGLSVGDCPLGPMTHRGEEDWLYERLAP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_91 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_91 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000014065	1 retrocopy	retro_mmur_91 ,