RetrogeneDB ID: retro_mmur_920

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_130987:499..1140(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000010629
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SFXN3
• Ensembl ID: ENSMICG00000000018
• Aliases: None
• Description: sideroflexin 3 [Source:HGNC Symbol;Acc:16087]

Sequence

>retro_mmur_920
GGAGAATTGCCACCAAACATCGACATCAGAGAGCCTCGCTGGGATCAAAGCAGCTTTGCCGGACGAGCCAATCACTTCTT
CACCGTAACTGACCCTAGGAATATTCTGCTAACAAACGAACAACTAGAGAATGCAAGAAAAACAGTACATGATTACAGGC
AAGGAATTGTTCCTCCAGGTCTTACGGAAAATGAATTATGGAGAGCAAAGTACATCTACGATTCAGCTTTTCATCCTGAT
ACCGGTGAAAAGATGATTTTGATAGGAAGAATGTCAGCTCAGGTGCCAATGAACATGACCATCACAGGTTGCATGATGAC
TTTTTATAGGACAGCGCCGGCGGTGGTGTTCTGGCAGTGGGTCAACCAGTCCTTCAACGCGGTGGTCAACTGCACCAACA
GGAGTGGAGACGCCCCCTCACCGTGAAGGAACTGGGAACGGCTTATGTGACTGCCACAACTGGTGCTGTAGCGACGGCTC
TAGGTCTTAACGCCCTAACCAAGCACGTCTCACCACTGATCGGACGTTTTGTTCCCTTTGCTGCCATAGGTGCTGCTAAT
TGTGTTAATATTCCACTAATGAGGCAAAGGGAGCTCATAGTTGACATTCCGGTCACGGACGACAACGGGAACCGCGTGGG
G

Alignment

ORF - retro_mmur_920 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.28 %
• Parental protein coverage: 65.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GELPLDINIQEPRWDQSTFLGRARHFFTVTDPRNLLLSGAQLEASRNIVQNYRAGVVTPGLTEDQLWRAK
          GELP..I.I.EPRWDQS.F.GRA.HFFTVTDPRN.LL...QLE..R..V..YR.G.V.PGLTE..LWRAK
Retrocopy GELPPNIDIREPRWDQSSFAGRANHFFTVTDPRNILLTNEQLENARKTVHDYRQGIVPPGLTENELWRAK

Parental  YVYDSAFHPDTGEKVVLIGRMSAQVPMNMTITGCMLTFYRQTPTVVFWQWVNQSFNAIVNYSNRSGDA-P
          Y.YDSAFHPDTGEK..LIGRMSAQVPMNMTITGCM.TFYR..P.VVFWQWVNQSFNA.VN..NRSGDA.P
Retrocopy YIYDSAFHPDTGEKMILIGRMSAQVPMNMTITGCMMTFYRTAPAVVFWQWVNQSFNAVVNCTNRSGDA<P

Parental  ITVRQLGTAYVSATTGAVATALGLKSLTKHLPPLVGRFVPFAAVAAANCINIPLMRQRELQVGIPVTDEA
          .TV..LGTAYV.ATTGAVATALGL..LTKH..PL.GRFVPFAA..AANC.NIPLMRQREL.V.IPVTD..
Retrocopy LTVKELGTAYVTATTGAVATALGLNALTKHVSPLIGRFVPFAAIGAANCVNIPLMRQRELIVDIPVTDDN

Parental  GQRLG
          G.R.G
Retrocopy GNRVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_920 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_920 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000012508	1 retrocopy	retro_etel_1107,
Microcebus murinus	ENSMICG00000000018	2 retrocopies	retro_mmur_1262, retro_mmur_920 ,