RetrogeneDB ID: retro_mmur_929

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_134568:0..1110(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TRAF3IP2
• Ensembl ID: ENSMICG00000008708
• Aliases: None
• Description: TRAF3 interacting protein 2 [Source:HGNC Symbol;Acc:1343]

Sequence

>retro_mmur_929
CCCAATGGCTTGTCTGCACCCCAAGCCCCTCACTATTCCTCTGGAGACTTTTCTCAAACTCACCCACCCCTGAAACTTGC
AAATCCCCAGTGGCCTGTGTCCCAGAAGGTCACCTGGCTGCGCATGAAAGTTCTGGAGGAGAGTGAAGACAGCTTCTGCA
GGAGACACCCAGACCCAGGCAAAGATTTTCCCTCAGGCTGCTCTACAGTCAGCAAGCCTGCGTCTGAGTCTGTGGTTGGA
GCTCTCCCCACAGAACATCAGTTTTCATTTATGGAAAACCATAATCAATGTCTGGGCTCTCAGCTTTCAGCAGCTTTTCC
TGACACTGGTCATGACTCAAAAAAATCAGACTGAAGTTTACCTAATGCCTCAGCAGACTCCTTGGGAAGTAGCCAAGAGA
TAGTGCAATGGCCCCAGCCCCACAGGAACCTGGAAGCCCTGGATATGCCTACAATAGACACAGGCTATGATTCCCAGCCC
CAGGATGTCCTGGGCATCAGGCAGCTGGAAAGGCCCCTGCCCCTCACCTCCATGTGTTACCCCCAGGACCTCTCCAGACC
TTTCAGGTCCCAGGAGTTCCATCAGTTTGAACCTCAGTGGTATCCAATGTGTTCACAGGTGCTGCCTTCCAATCCTCCCC
CACATGCTCCATGGAACTATCATTACCATTGTCCTGGAAGTCCTGATCACCAAACGCCATATGGACATGACTACCCTCGA
ACAGCCTACCAGCAAGTGATCCAGCCAGCTCTACCTGGGAAGCCTCTACCTGCAGCCAGTGTGAGAGGGCTGCACCCTGT
GCAGAAGGTCATCCTGAATTATCCCAGCCCCTGGGGCCAAGAAGAGAGGCCTACACAAAGAGACTGCTCCGTTCCAAGGC
TTCCAAGGTATCAGGACCAGTTGTATCACCAGCCACATAATAGAGCTGGAGCTCCTGCGGAGTCCTTGAAGTGTCCTGCA
GAACTGAGACCACAGGGTCCCCAAGCTCTGTCCCCAGCTGCTGTGTCTAGACCCCCTAGTAACTCTCCAGCCAGAGAACT
CTGAAAACAAGCAATTTGTCAGAGGATTGCGGAAAGTTTTACCACTTATTCTTTGAACACAGCCATGGAG

Alignment

ORF - retro_mmur_929 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.42 %
• Parental protein coverage: 64.75 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PNGLFAAQAPHYSPGDFSPVYPPLKLANPQRPVSQQVTCLRTKVLEESEDSFCRRHPDPGKDFPSGCSTA
          PNGL.A.QAPHYS.GDFS...PPLKLANPQ.PVSQ.VT.LR.KVLEESEDSFCRRHPDPGKDFPSGCST.
Retrocopy PNGLSAPQAPHYSSGDFSQTHPPLKLANPQWPVSQKVTWLRMKVLEESEDSFCRRHPDPGKDFPSGCSTV

Parental  SEPASESAVGALPAEHQFSFMEKRNQWLGSQLSAASPDTGHDSNKSDQTLPNASADSLGSSQEMVQRPQP
          S.PASES.VGALP.EHQFSFME..NQ.LGSQLSAA.PDTGHDS.KSD..LPNASADSLGSSQE.VQ.PQP
Retrocopy SKPASESVVGALPTEHQFSFMENHNQCLGSQLSAAFPDTGHDSKKSD*SLPNASADSLGSSQEIVQWPQP

Parental  HRSRAALDLPTIDTGYDSQPQDVLGIRQLERPLPLTSMCYPQDLPRPLRSRECHQFEPQRYAACAQVLPP
          HR...ALD.PTIDTGYDSQPQDVLGIRQLERPLPLTSMCYPQDL.RP.RS.E.HQFEPQ.Y..C.QVLP.
Retrocopy HRNLEALDMPTIDTGYDSQPQDVLGIRQLERPLPLTSMCYPQDLSRPFRSQEFHQFEPQWYPMCSQVLPS

Parental  NPPAHAPWNYHYRCPGSPDQQRPYGQDYPRAAYQQVIQPALPGQPLPVASVRGLHPVQKVVLNYPSPWDQ
          NPP.HAPWNYHY.CPGSPD.Q.PYG.DYPR.AYQQVIQPALPG.PLP.ASVRGLHPVQKV.LNYPSPW.Q
Retrocopy NPPPHAPWNYHYHCPGSPDHQTPYGHDYPRTAYQQVIQPALPGKPLPAASVRGLHPVQKVILNYPSPWGQ

Parental  EERPTQRDCSFPGLPRYQDQPFHQPHNRAGAPEESLECPAELRPQGPQALSPAAVPRPPSNLPAR-GTLK
          EERPTQRDCS.P.LPRYQDQ..HQPHNRAGAP.ESL.CPAELRPQGPQALSPAAV.RPPSN.PAR..TLK
Retrocopy EERPTQRDCSVPRLPRYQDQLYHQPHNRAGAPAESLKCPAELRPQGPQALSPAAVSRPPSNSPAR<RTLK

Parental  TSNLPEE-LRKV-FITYSLDTAME
          TSNL.E..LRKV.F.TYSL.TAME
Retrocopy TSNLSED<LRKV<FTTYSLNTAME

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_929 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_929 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000008708	1 retrocopy	retro_mmur_929 ,