RetrogeneDB ID: retro_mmur_944

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_13905:3211..3698(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LYPD5
• Ensembl ID: ENSMICG00000007820
• Aliases: None
• Description: LY6/PLAUR domain containing 5 [Source:HGNC Symbol;Acc:26397]

Sequence

>retro_mmur_944
CCGCCTATGGGCCAGATGCAATCCAACCACGACACGCTGCCACCTGACTGCTTAGTGGTGCGCGGCTGCGCGACTGACTT
TGCCACACCCACCTCATGATCCACAACACCATTCCCAACCTGAGCCAAGCTTCCGACCCACAGACGCTCAGGCGCACCAA
GTGCTACGCCTGCGTGGAGGTCCTTCTGGAGTACTGTGCCGAGGAGAAGTCCCGGCGGGTCTCATGTCACCAGGACCAGA
GTGTCTGTTTCCAGGGCAATGGCAGAATGACAATCGGCAACTTCTCAGTCCCTGTGTACATCAGAACCTGCCACCGGCCC
TCGTGCACCACCATGGGCACCATCAGACCCTGGACAGACATCCTCTCCAGGGCTCCTGCTGTGAGGGGCACTTCTGCAAC
AGGGACTCGGTGACCCAGCCCTCCACCACCTCTTCGGCCACTGTCCCTCCCCTGGTGCCCCAGGTCATGGTGTTACTGGT
TGGGGTC

Alignment

ORF - retro_mmur_944 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.36 %
• Parental protein coverage: 93.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PPPGEMQSNKDGLPPDFSVVRGCATDF-CNGHLVTHDAIPNLSPPPNPQRLSGTECYACVGVHPEDCTPE
          PP.G.MQSN.D.LPPD..VVRGCATDF.C..HL..H..IPNLS....PQ.L..T.CYACV.V..E.C..E
Retrocopy PPMGQMQSNHDTLPPDCLVVRGCATDF<CHTHLMIHNTIPNLSQASDPQTLRRTKCYACVEVLLEYCAEE

Parental  KSRRVQCHQDQSVCFQGNGRMTIGNFSVPVYIRTCHRPSCTTMGTTSPWTDI-DLQGSCCEGHFCNRDSV
          KSRRV.CHQDQSVCFQGNGRMTIGNFSVPVYIRTCHRPSCTTMGT..PWTDI..LQGSCCEGHFCNRDSV
Retrocopy KSRRVSCHQDQSVCFQGNGRMTIGNFSVPVYIRTCHRPSCTTMGTIRPWTDI<PLQGSCCEGHFCNRDSV

Parental  TQPFTTASAAVPALVPQVMALLLPV
          TQP.TT.SA.VP.LVPQVM.LL..V
Retrocopy TQPSTTSSATVPPLVPQVMVLLVGV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_944 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_944 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007820	1 retrocopy	retro_mmur_944 ,