RetrogeneDB ID: retro_mmur_960

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_14321:21732..22251(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EFCAB1
• Ensembl ID: ENSMICG00000006465
• Aliases: None
• Description: EF-hand calcium binding domain 1 [Source:HGNC Symbol;Acc:25678]

Sequence

>retro_mmur_960
ATGAACCGCAAGAAGCTGCAGAAGTTGACGGACACCTTAACTAAAAATTGCAAGCATTTTAATACATTTGAAGTGAATTG
TCTTATAAAGTTATTTTATAATTTGGTGGGAGAAGGCGTAGAGCGGCAAGGAACAACCATTGGACTAGATCGTAATGCAT
TTCGAAACATCCTGCACGTGACATTTGGAATGACTGATGACATAATAATGGACAGAGTATTCCGAGGTTTTGATAAAGAC
AATGATGGCTGTGTAAATGTAACGGAGTGGGTTTGCGGATTATCACTGTTTCTTCGAGGATCTTTGGAAGAAAAAATGAA
ATATTGCTTTGAAGTGTTTGATTTGAATGGTGATGGATTCATTTCAAAGGAGGAAATGTTTCACATGTTGAAGAACAGCC
TTCTCAAACAGCCATCTGAAGAAGACCCTGATGAAGGAATTAAAGATTTGGTCGAAATAACACTTAAGAAAATGGATTAT
GACCATGACGGGAAGCTGTCTTTTGCAGACTATGAACAA

Alignment

ORF - retro_mmur_960 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.42 %
• Parental protein coverage: 81.6 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNRKKLQKLTDTLTKNCKHFNTFEVNCLIKLFYNLVGEGVERQGTTIGLDRNAFRNILHVTFGMTDDMIM
          MNRKKLQKLTDTLTKNCKHFNTFEVNCLIKLFYNLVGEGVERQGTTIGLDRNAFRNILHVTFGMTDD.IM
Retrocopy MNRKKLQKLTDTLTKNCKHFNTFEVNCLIKLFYNLVGEGVERQGTTIGLDRNAFRNILHVTFGMTDDIIM

Parental  DRVFRGFDKDNDGCVNVTEWVCGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE
          DRVFRGFDKDNDGCVNVTEWVCGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE
Retrocopy DRVFRGFDKDNDGCVNVTEWVCGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE

Parental  EDPDEGIKDLVEITLKKMDYDHDGKLSFADYEQ
          EDPDEGIKDLVEITLKKMDYDHDGKLSFADYEQ
Retrocopy EDPDEGIKDLVEITLKKMDYDHDGKLSFADYEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_960 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_960 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000006465	1 retrocopy	retro_mmur_960 ,