RetrogeneDB ID: | retro_mmur_960 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_14321:21732..22251(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | EFCAB1 | ||
| Ensembl ID: | ENSMICG00000006465 | ||
| Aliases: | None | ||
| Description: | EF-hand calcium binding domain 1 [Source:HGNC Symbol;Acc:25678] |
Retrocopy-Parental alignment summary:
>retro_mmur_960
ATGAACCGCAAGAAGCTGCAGAAGTTGACGGACACCTTAACTAAAAATTGCAAGCATTTTAATACATTTGAAGTGAATTG
TCTTATAAAGTTATTTTATAATTTGGTGGGAGAAGGCGTAGAGCGGCAAGGAACAACCATTGGACTAGATCGTAATGCAT
TTCGAAACATCCTGCACGTGACATTTGGAATGACTGATGACATAATAATGGACAGAGTATTCCGAGGTTTTGATAAAGAC
AATGATGGCTGTGTAAATGTAACGGAGTGGGTTTGCGGATTATCACTGTTTCTTCGAGGATCTTTGGAAGAAAAAATGAA
ATATTGCTTTGAAGTGTTTGATTTGAATGGTGATGGATTCATTTCAAAGGAGGAAATGTTTCACATGTTGAAGAACAGCC
TTCTCAAACAGCCATCTGAAGAAGACCCTGATGAAGGAATTAAAGATTTGGTCGAAATAACACTTAAGAAAATGGATTAT
GACCATGACGGGAAGCTGTCTTTTGCAGACTATGAACAA
ORF - retro_mmur_960 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.42 % |
| Parental protein coverage: | 81.6 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MNRKKLQKLTDTLTKNCKHFNTFEVNCLIKLFYNLVGEGVERQGTTIGLDRNAFRNILHVTFGMTDDMIM |
| MNRKKLQKLTDTLTKNCKHFNTFEVNCLIKLFYNLVGEGVERQGTTIGLDRNAFRNILHVTFGMTDD.IM | |
| Retrocopy | MNRKKLQKLTDTLTKNCKHFNTFEVNCLIKLFYNLVGEGVERQGTTIGLDRNAFRNILHVTFGMTDDIIM |
| Parental | DRVFRGFDKDNDGCVNVTEWVCGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE |
| DRVFRGFDKDNDGCVNVTEWVCGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE | |
| Retrocopy | DRVFRGFDKDNDGCVNVTEWVCGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE |
| Parental | EDPDEGIKDLVEITLKKMDYDHDGKLSFADYEQ |
| EDPDEGIKDLVEITLKKMDYDHDGKLSFADYEQ | |
| Retrocopy | EDPDEGIKDLVEITLKKMDYDHDGKLSFADYEQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_960 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_960 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000006465 | 1 retrocopy |
retro_mmur_960 ,
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