RetrogeneDB ID: | retro_mmur_970 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_14574:12318..14667(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PFKM | ||
| Ensembl ID: | ENSMICG00000009077 | ||
| Aliases: | None | ||
| Description: | phosphofructokinase, muscle [Source:HGNC Symbol;Acc:8877] |
Retrocopy-Parental alignment summary:
>retro_mmur_970
GAGTGGATCATGACCCATGAAGAGCACCATGCAGCCAAAACTCTGGGGATTGGCAAAGCCATTGCCGTCTTAACCTCTGG
TGGAGATGCCCAAGGAATGAATGCTGCTGTCTGGGCTGTGGTTCGAGTTGGTATCTTTACCGGTGCCCGAGTCTCCTTTT
CCATGAGGGTTATCAAGGCCTGGTGGATGGTGGAGATCACATCAGGGAAGCCACCTGGGAGAGCGTTTCGATGATGCTGC
AGCTGGGAGGCACGGTGATTGGAAGTGCCCGGTGTAAGGACTTTCGGGACCGAGAAGGACGACTCCGAGCTGCCTACAAC
CTGGTGAAGCATGGGATCACCAATCTGTGTGTCATTGGGGGTGATGGCAGCCTCACTGGGGCTGACACCTTCCGTTCTGA
GTGGAGTGACTTGCTGAGTGACCTCCAAAAAGCGGGTAAGGTCACAGCAGAGGAGGTTACGAAGTCCAGCTACCTGAACA
TCGTGGGGCAGGTTGGCTCCATTGACAATGACTTCTGCGGCACCGATATGACCATTGGCACCGACTCTGCACTGCACTGC
ATCATAGAAATTGTAGATGCCATCACCACCACTGCCCAGAGTCACCAGAGGACATTTGTGTTGGAAGTGATGGGCCGCCA
CTGTGGGTACCTGGCCCTTGTCACCTCTCTCTCCTGTGGGGCCGACTGGGTTTTTATTCCTGAATGTCCACCAGATGATG
ACTGGGAGGAGCACCTTTGTAGCCGACTCAGCGAGACAAGGATCCGTGGTTCCCGTCTCAACATCATCATTGTGGCCGAG
GGTGCAATTGACAAGAATGGGAAACCAATCACCTCAGAAGACATAAAAAATCTGGTGGTAAAGCGTCTGGGATATGACAC
CTGGGTCACTGTCTTGGGGCATGTGCAGTGGGGTGGGACACCGTCAGCCTTTGACCAAATCCTGGGCAGCAGGATGGGTG
TGGAAGCAGTGATGGCGCTTTTGGAGGGGACCCCGGATACCCCAGCCTGTGTGGTGAGCCTCTCTGGTAACCAGGCTGTG
CGCCTGCCCCTCATGGAGTGTGTCCAGGTGACCAAAGACGTGACCAAGGCCATGGAGGAGAAGAAATTTGATGAAGCCAT
GAAGCTGAGAGGCTGGAGCTTCATGAACAACTGGGAGGTGTACAAGCTTCTAGCTCATGTCAGACCCTCAGTATCTAAGA
CTGTTTCCCACACAGTGGCCGTGATGAACGTGGGGGCGCCGGCTGCAGGCATGAATGCTGCTGTTCGCTCCACTGTGAGG
ATTGGCCTCATCCAGGGCAACCGAGTGCTGGTTGTACATGACAGCTTCGAGGGCCTGGCCAAGGGTCAGATTGAGGAAGC
TGGCTGGAGCTATGTTGGGGGCTGGACTGGCCAAGGTGGTTCCAAACTTGGGACTAAAAGGACTCTACCCAAGAAGAGCT
TTGACCAGATCAGTGCCAACATAACTAAGTTTAACATCCAGGGCCTGATCATCATCGGGGGCTTTGAAGCTTACACGGGG
GGGCCTGGAACTGATGGAGGGCAGGAAGCAATTTGATGAACTCTGCATCCCATTTGTGGTCATTCCTGCCACAGTCTCCA
ACAACGTCCCTGGCTCAGACTTCAGCATCGGGGCCGACACAGCACTTAATACTATCTGCACGACCTGTGACCGCATCAAG
CAATCAGCAGCAGGCACCAAGCGTCGGGTGTTTATCATCGAGACTATGGGTGGCTACTGTGGCTACCTGGCCACCATAGC
AGGACTGGCAGCTGGGGCCGATGCTGCCTACATTTTTGAGGAGCCCTTCACCATTTGAGACCTGCAGGCAAATGTTGAAC
ATCTGGTGCAAAAGATGAAAACAACTGTGAAAAGGGGCTTGGTGTTAAGGAATGAAAAGTGCAATGAGAACTATACCACT
GACTTCATTTTCAACCTGTACTCTGAAGAGGGGAAGGGCATCTTCGACAGCAGGAAGAATGTGCTCGGTCACATGCAGCA
GGGTGGGAGCCCAACTCCATTTGACAGGAATTTCGCCACTAAGATGGGTGCCAAAGCTATGAACTGGATGTCTGGGAAAA
TCAAAGAGAGTTACCGTAATGGGCGGAACTTTGCCAACAGTCCAGACTCGGGCTGTGTTCTGGGAATGCGTAAGAGGGCC
TGGGTCTTCCAGCCAGTGACTGAGCTGAAGGACCAGACCGATTTTGAGCATAGAATCCCCAAGGAACAGTGGTGGCTGAA
ACTGAGGCCCATCCTCAAAATCCTGGCCAAGTACGAGATTGACTTGGACACCTCAGAACACGCCCACCTGGAGCACATCA
CTCGGAAGCGGTCTGGGGATGCTGCCGTC
ORF - retro_mmur_970 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 96.82 % |
| Parental protein coverage: | 95.13 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | EWIMTHEEHHAAKTLGIGKAIAVLY-GGDAHGMNAAVRAVVRVGIFTGARVFF-VHEGYQGLVDGGDHIR |
| EWIMTHEEHHAAKTLGIGKAIAVL..GGDA.GMNAAV.AVVRVGIFTGARV.F..HEGYQGLVDGGDHIR | |
| Retrocopy | EWIMTHEEHHAAKTLGIGKAIAVLTSGGDAQGMNAAVWAVVRVGIFTGARVSF<FHEGYQGLVDGGDHIR |
| Parental | EATWESVSMMLQLGGTVIGSARCKDFRDREGRLRAAYNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLL |
| EATWESVSMMLQLGGTVIGSARCKDFRDREGRLRAAYNLVK.GITNLCVIGGDGSLTGADTFRSEWSDLL | |
| Retrocopy | EATWESVSMMLQLGGTVIGSARCKDFRDREGRLRAAYNLVKHGITNLCVIGGDGSLTGADTFRSEWSDLL |
| Parental | SDLQKAGKITAEEVTKSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRIIEIVDAITTTAQSHQRTFVLE |
| SDLQKAGK.TAEEVTKSSYLNIVG.VGSIDNDFCGTDMTIGTDSALH.IIEIVDAITTTAQSHQRTFVLE | |
| Retrocopy | SDLQKAGKVTAEEVTKSSYLNIVGQVGSIDNDFCGTDMTIGTDSALHCIIEIVDAITTTAQSHQRTFVLE |
| Parental | VMGRHCGYLALVTSLSCGADWVFIPECPPDDDWEEHLCRRLSETRIRGSRLNIIIVAEGAIDKNGKPITS |
| VMGRHCGYLALVTSLSCGADWVFIPECPPDDDWEEHLC.RLSETRIRGSRLNIIIVAEGAIDKNGKPITS | |
| Retrocopy | VMGRHCGYLALVTSLSCGADWVFIPECPPDDDWEEHLCSRLSETRIRGSRLNIIIVAEGAIDKNGKPITS |
| Parental | EDIKNLVVKRLGYDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRL |
| EDIKNLVVKRLGYDT.VTVLGHVQ.GGTPSAFD.ILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRL | |
| Retrocopy | EDIKNLVVKRLGYDTWVTVLGHVQWGGTPSAFDQILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRL |
| Parental | PLMECVQVTKDVTKAMEEKKFDEAMKLRGRSFMNNWEVYKLLAHVRPPVSKTVSHTVAVMNVGAPAAGMN |
| PLMECVQVTKDVTKAMEEKKFDEAMKLRG.SFMNNWEVYKLLAHVRP.VSKTVSHTVAVMNVGAPAAGMN | |
| Retrocopy | PLMECVQVTKDVTKAMEEKKFDEAMKLRGWSFMNNWEVYKLLAHVRPSVSKTVSHTVAVMNVGAPAAGMN |
| Parental | AAVRSTVRIGLIQGNRVLVVHDGFQGLA-GQIEEAGWSYVGGWTGQGGSKLGTKRTLPKKSFDQISANIT |
| AAVRSTVRIGLIQGNRVLVVHD.F.GLA.GQIEEAGWSYVGGWTGQGGSKLGTKRTLPKKSFDQISANIT | |
| Retrocopy | AAVRSTVRIGLIQGNRVLVVHDSFEGLAKGQIEEAGWSYVGGWTGQGGSKLGTKRTLPKKSFDQISANIT |
| Parental | KFNIQGLIIIGGFEAYT-GGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSIGADTALNTICTTCDR |
| KFNIQGLIIIGGFEAYT.GGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSIGADTALNTICTTCDR | |
| Retrocopy | KFNIQGLIIIGGFEAYT>GGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSIGADTALNTICTTCDR |
| Parental | IKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLV |
| IKQSAAGTKRRVFIIETMGGYCGYLAT.AGLAAGADAAYIFEEPFTI.DLQANVEHLVQKMKTTVKRGLV | |
| Retrocopy | IKQSAAGTKRRVFIIETMGGYCGYLATIAGLAAGADAAYIFEEPFTI*DLQANVEHLVQKMKTTVKRGLV |
| Parental | LRNEKCNENYTTDFIFNLYSEEGKGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMSGKIKESY |
| LRNEKCNENYTTDFIFNLYSEEGKGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMSGKIKESY | |
| Retrocopy | LRNEKCNENYTTDFIFNLYSEEGKGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMSGKIKESY |
| Parental | RNGRIFANSPDSGCVLGMRKRALVFQPVTELKDQTDFEHRIPKEQWWLKLRPILKILAKYEIDLDTSEHA |
| RNGR.FANSPDSGCVLGMRKRA.VFQPVTELKDQTDFEHRIPKEQWWLKLRPILKILAKYEIDLDTSEHA | |
| Retrocopy | RNGRNFANSPDSGCVLGMRKRAWVFQPVTELKDQTDFEHRIPKEQWWLKLRPILKILAKYEIDLDTSEHA |
| Parental | HLEHITRKRSGDAAV |
| HLEHITRKRSGDAAV | |
| Retrocopy | HLEHITRKRSGDAAV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_970 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_970 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000009035 | 1 retrocopy | |
| Microcebus murinus | ENSMICG00000009077 | 1 retrocopy |
retro_mmur_970 ,
|
| Otolemur garnettii | ENSOGAG00000005501 | 1 retrocopy |