RetrogeneDB ID: retro_mmus_1795

Retrocopy location

• Organism: Mouse (Mus musculus)
• Coordinates: 18:80188767..80189070(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Eny2
• Ensembl ID: ENSMUSG00000022338
• Aliases: Eny2, 1810057B09Rik, 6720481I12, DC6, Ey2
• Description: enhancer of yellow 2 homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1919286]

Sequence

>retro_mmus_1795
ATGGTGGTTAGCAAGATGAACAAAGATGCAGAGATGAGAGCCATGGTTAACCAAAAGTTAATAGAAGCTGGAGAACGAGA
ACGCCTCAAAGAGTTGCTGAGAGCTGAGTTAACTGAGTGCAGCTGGAAGGATCAGTTGAAGGCACACTCTAAAGAGGTAA
TTAAAGAGAAAGGACTAGGATACATTACCATTGATGACATGGTGGCTGAACTCACTCCAAAAGGCAGAGAGCCCTGGTAC
TTGACAGTGTAAAAGAAGGAACTCCTACAGAGAATGAGAACATTTCTTGTTCAGCATGCCAGT

Alignment

ORF - retro_mmus_1795 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.25 %
• Parental protein coverage: 99.01 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVVSKMNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAE
          MVVSKMNKDA.MRA..NQKLIE.GERERLKELLRA.L.EC.WKDQLKAH.KEVIKEKGL...T.DD.VAE
Retrocopy MVVSKMNKDAEMRAMVNQKLIEAGERERLKELLRAELTECSWKDQLKAHSKEVIKEKGLGYITIDDMVAE

Parental  ITPKGRALVPDSVKKE-LLQRIRTFLAQHAS
          .TPKGR......V.K..LLQR.RTFL.QHAS
Retrocopy LTPKGREPWYLTV*KKELLQRMRTFLVQHAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.02 RPM	38.99 RPM
SRP007412_cerebellum	0.04 RPM	26.31 RPM
SRP007412_heart	0.00 RPM	17.93 RPM
SRP007412_kidney	0.00 RPM	43.06 RPM
SRP007412_liver	0.00 RPM	34.65 RPM
SRP007412_testis	0.00 RPM	10.84 RPM

ChIP-Seq

RNA Polymerase II activity near the 5' end of retro_mmus_1795 was not detected

EST

No EST(s) were mapped for retro_mmus_1795 retrocopy.

TSS

No TSS is located nearby retro_mmus_1795 retrocopy 5' end.

Lab

retro_mmus_1795 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmus_1795 has 0 orthologous retrocopies within eutheria group .

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000003039	1 retrocopy	retro_acar_1,
Bos taurus	ENSBTAG00000007387	1 retrocopy	retro_btau_754,
Dasypus novemcinctus	ENSDNOG00000007377	1 retrocopy	retro_dnov_25,
Echinops telfairi	ENSETEG00000010882	2 retrocopies	retro_etel_1826, retro_etel_450,
Myotis lucifugus	ENSMLUG00000027585	1 retrocopy	retro_mluc_357,
Mustela putorius furo	ENSMPUG00000005873	2 retrocopies	retro_mputfur_1128, retro_mputfur_323,
Mus musculus	ENSMUSG00000022338	3 retrocopies	retro_mmus_1055, retro_mmus_1795 , retro_mmus_3511,
Rattus norvegicus	ENSRNOG00000004681	1 retrocopy	retro_rnor_2193,
Sarcophilus harrisii	ENSSHAG00000001787	4 retrocopies	retro_shar_454, retro_shar_675, retro_shar_815, retro_shar_816,
Tarsius syrichta	ENSTSYG00000005590	1 retrocopy	retro_tsyr_673,
Tursiops truncatus	ENSTTRG00000001742	3 retrocopies	retro_ttru_46, retro_ttru_845, retro_ttru_997,