RetrogeneDB ID: | retro_mmus_3688 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:113226570..113227320(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081831 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | G3bp1 | ||
Ensembl ID: | ENSMUSG00000018583 | ||
Aliases: | None | ||
Description: | GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465] |
Percent Identity: | 79.68 % |
Parental protein coverage: | 53.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMSQNF |
..MEKPSPLLV..E.V.Q.YTLLNQAPD.LHRFYG.NSSYAH.GLDSNGKPA.AVY.QKEIHRKVMSQNF | |
Retrocopy | IAMEKPSPLLV*GESVWQCYTLLNQAPDTLHRFYGMNSSYAHKGLDSNGKPA-AVYRQKEIHRKVMSQNF |
Parental | TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGG |
TNC.TKI..VDAH.TLN..VV.QVMGL.SNNNQALRRFM..FVLAPEGSVAN.FYVHNDIFRYQDE.FGG | |
Retrocopy | TNCYTKICLVDAHTTLNGRVVFQVMGLWSNNNQALRRFMKNFVLAPEGSVANTFYVHNDIFRYQDEAFGG |
Parental | FVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVVEPEPEPEPEPEPEPVSDIQ |
FVT.PQEESEE.VEEPEER.QTPEV..DDSGT.Y.QTVSNDLEEHLEEPVV..EPEPEPE.E.EPV.D.. | |
Retrocopy | FVTDPQEESEEVVEEPEEREQTPEVMSDDSGTLYGQTVSNDLEEHLEEPVVVSEPEPEPESELEPVPDT* |
Parental | EDKPEAALEEAAPDDVQKSTSPAPADVAPAQEDLRTFSWAS |
EDK.E.ALEE.AP.D.QK....A..DVAPAQEDL..FSWAS | |
Retrocopy | EDKTEPALEEPAPEDMQKRATLALTDVAPAQEDLGLFSWAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 58 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .45 RPM |
SRP007412_heart | 0 .00 RPM | 92 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 84 .14 RPM |
SRP007412_liver | 0 .00 RPM | 51 .42 RPM |
SRP007412_testis | 0 .00 RPM | 40 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000006626 | 2 retrocopies | |
Mus musculus | ENSMUSG00000018583 | 3 retrocopies |
retro_mmus_1389, retro_mmus_3229, retro_mmus_3688 ,
|
Nomascus leucogenys | ENSNLEG00000016470 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022143 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001726 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013186 | 1 retrocopy |