>retro_mmus_462
ATGGAAAACCACAGCAAGCAAACTGAGGCTCCCACCCGGAAGAACATATATGCCAGCTTGGTATCCCCCTCTGTATCCAC
CAGCAGCTTTCCAAGGACCTTCATACCGTGCTGCTTACTCCATACCCCAGGCTGGCTACCAAGGGCCTCCGGGCCCCTAT
CCAGGGCCCCAACCTGGTTACCCAGTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGTGGCTTTCCTGTCCAAAATCA
GCCAGCATGTAATCATCCAGGTGGGCCTGGGGGGACCCCATGGATGCCAGCCCCCCCTCCTCCACTGAACTGTCCACCAG
GGCTGGAATACTTAGCTCAGATTGATCAGCTTCTGGTTCATCAGCAAATTGAGCTTCTGGAAGTCTTAACAGGCTTTGAA
ACAAATAACAAATATGAAATCAAGAACAGCCTCGGGCAGAGAGTTTACTTTGCAGTGGAAGATACTGACTGCTGTACCCG
AAACTGCCGTGGGGCGTCTAGACCTTTCACCTTGAGGATCCTGGATAACCTGGGCCGAGAAGTCATGACTCTGGAGAGAC
CTCTGAGATGCAGTTACTGCTGCTTCCCCTGCTGCCTCCAGGAGATAGAAATCCAGGCTCCTCCTGGGGTGCCAGTAGGT
TATGTAACTCAGACCTGGCACCCATGTCTGCCCAAGTTCACTCTCCAAAATGAGAAGAAGCAGGATGTTCTGAAAGTTGT
TGGTTCGTGTGTTGTGTGTAGCTGCTGTTCCGACATTGACTTTGAGCTCAAATCTCTAGATGAAGAATCAGTAGTTGGCA
AAATTTCTAAGCAGTGGTCTGGTTTTGTGAGAGAGGCCTTCACGGATGCAGACAATTTTGGGGTCCAGTTCCCGCTAGAC
CTGGATGTGAAGATGAAAGCTGTGATGCTTGGTGCTTGTTTCCTCATAGATTTCACGTTTTTTGAAAGAACTGGAAACGA
GGAACAAAGATCAGGAGCATGG
ORF - retro_mmus_462 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
95.43 % |
Parental protein coverage: |
99.7 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MENHSKQTEA-PHPGTYMPAGYPPPYPPAAFQGPSDHAAYPIPQAGYQGPPGPYPGPQPGYPVPPGGYAG |
| MENHSKQTEA.P...TYMPA.YPP.YPPAAFQGPS..AAY.IPQAGYQGPPGPYPGPQPGYPVPPGGYAG |
Retrocopy | MENHSKQTEA>PPGRTYMPAWYPPLYPPAAFQGPSYRAAYSIPQAGYQGPPGPYPGPQPGYPVPPGGYAG |
|
Parental | GGPSGFPVQNQPAYNHPGGPGGTPWMPAPPPPLNCPPGLEYLAQIDQLLVHQQIELLEVLTGFETNNKYE |
| GGPSGFPVQNQPA.NHPGGPGGTPWMPAPPPPLNCPPGLEYLAQIDQLLVHQQIELLEVLTGFETNNKYE |
Retrocopy | GGPSGFPVQNQPACNHPGGPGGTPWMPAPPPPLNCPPGLEYLAQIDQLLVHQQIELLEVLTGFETNNKYE |
|
Parental | IKNSLGQRVYFAVEDTDCCTRNCCGASRPFTLRILDNLGREVMTLERPLRCSSCCFPCCLQEIEIQAPPG |
| IKNSLGQRVYFAVEDTDCCTRNC.GASRPFTLRILDNLGREVMTLERPLRCS.CCFPCCLQEIEIQAPPG |
Retrocopy | IKNSLGQRVYFAVEDTDCCTRNCRGASRPFTLRILDNLGREVMTLERPLRCSYCCFPCCLQEIEIQAPPG |
|
Parental | VPVGYVTQTWHPCLPKFTLQNEKKQDVLKVVGPCVVCSCCSDIDFELKSLDEESVVGKISKQWSGFVREA |
| VPVGYVTQTWHPCLPKFTLQNEKKQDVLKVVG.CVVCSCCSDIDFELKSLDEESVVGKISKQWSGFVREA |
Retrocopy | VPVGYVTQTWHPCLPKFTLQNEKKQDVLKVVGSCVVCSCCSDIDFELKSLDEESVVGKISKQWSGFVREA |
|
Parental | FTDADNFGIQFPLDLDVKMKAVMLGACFLIDFMFFERTGNEEQRSGAW |
| FTDADNFG.QFPLDLDVKMKAVMLGACFLIDF.FFERTGNEEQRSGAW |
Retrocopy | FTDADNFGVQFPLDLDVKMKAVMLGACFLIDFTFFERTGNEEQRSGAW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
1 .05 RPM |
SRP007412_cerebellum |
0 .00 RPM |
2 .34 RPM |
SRP007412_heart |
0 .03 RPM |
7 .56 RPM |
SRP007412_kidney |
0 .12 RPM |
25 .85 RPM |
SRP007412_liver |
0 .03 RPM |
10 .76 RPM |
SRP007412_testis |
0 .00 RPM |
0 .32 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_462 was not detected
No EST(s) were mapped for retro_mmus_462 retrocopy.
No TSS is located nearby retro_mmus_462 retrocopy 5' end.
retro_mmus_462 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_462 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.