RetrogeneDB ID: | retro_mmus_615 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
| Coordinates: | 10:4569731..4570223(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | GSTP1 | ||
| Ensembl ID: | ENSMUSG00000097830 | ||
| Aliases: | None | ||
| Description: | Glutathione S-transferase P 1 [Source:UniProtKB/Swiss-Prot;Acc:P19157] |
Retrocopy-Parental alignment summary:
>retro_mmus_615
TTCCCAGTTCGAGGGTACTGTGAAACTATACACACACTGCTGGCTGTCCAGAGCCAGAGCTGGAAGGAGGAATAAGTTAC
CAAAGATACCTGGATGGAAGGCTTCCTCAAGCCCACTTGTCTATTATGGACCACTCTCCAAGTTTGAGGACAGAGACCTC
ACCCTTTACTAATCTAATGTCATCTTGAGACACCTGGACCACTCCTTTGGGCTTTATAGAAAAAAGACCAGAGTAGGGCC
ACAGGTAGATATGGTGAATGATGGGATGGAGGACCTCCACTGCATATACATCACCCTCATCTACAGCAACTGTAAGAATG
GTAAGGAGGACTATGCTAGGCCCTGTCTGGACACCTGAAGCCTTTTGAGACCCCCCTGTCCCAGAAACAGGGAGGCAAAG
CCTTCGATGTGAGTGAACAGATCTCCTTTGCCGATTACATCTTGCTGGACCTGCTGCTGGTTCACTGAGTCCTGGCCCCT
GGCAGCACTGAT
TTCCCAGTTCGAGGGTACTGTGAAACTATACACACACTGCTGGCTGTCCAGAGCCAGAGCTGGAAGGAGGAATAAGTTAC
CAAAGATACCTGGATGGAAGGCTTCCTCAAGCCCACTTGTCTATTATGGACCACTCTCCAAGTTTGAGGACAGAGACCTC
ACCCTTTACTAATCTAATGTCATCTTGAGACACCTGGACCACTCCTTTGGGCTTTATAGAAAAAAGACCAGAGTAGGGCC
ACAGGTAGATATGGTGAATGATGGGATGGAGGACCTCCACTGCATATACATCACCCTCATCTACAGCAACTGTAAGAATG
GTAAGGAGGACTATGCTAGGCCCTGTCTGGACACCTGAAGCCTTTTGAGACCCCCCTGTCCCAGAAACAGGGAGGCAAAG
CCTTCGATGTGAGTGAACAGATCTCCTTTGCCGATTACATCTTGCTGGACCTGCTGCTGGTTCACTGAGTCCTGGCCCCT
GGCAGCACTGAT
ORF - retro_mmus_615 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 69.88 % |
| Parental protein coverage: | 78.1 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | FPVRGRCEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTCL-YGQLPKFEDGDLTLYQSNAILRHLGRSL |
| FPVRG.CE....LLA.Q.QSWKEE.VT.DTWM.G.LKPTCL.YG.L.KFED.DLTLY.SN.ILRHL..S. | |
| Retrocopy | FPVRGYCETIHTLLAVQSQSWKEE*VTKDTWMEGFLKPTCL>YGPLSKFEDRDLTLY*SNVILRHLDHSF |
| Parental | GLYGKNQREAAQMDMVNDGVEDLRGKYVTLIYTNYENGKNDYVK-ALPGHLKPFETLLSQNQGGKAFIVG |
| GLY.K..R...Q.DMVNDG.EDL...Y.TLIY.N..NGK.DY...AL.GHLKPFET.LSQ.QGGKAF.V. | |
| Retrocopy | GLYRKKTRVGPQVDMVNDGMEDLHCIYITLIYSNCKNGKEDYAR<ALSGHLKPFETPLSQKQGGKAFDVS |
| Parental | DQISFADYNLLDLLLIHQVLAPGCLD |
| .QISFADY.LLDLLL.H.VLAPG..D | |
| Retrocopy | EQISFADYILLDLLLVH*VLAPGSTD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_615 was not detected
No EST(s) were mapped for retro_mmus_615 retrocopy.
No TSS is located nearby retro_mmus_615 retrocopy 5' end.
retro_mmus_615 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_615 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mus musculus | ENSMUSG00000097830 | 1 retrocopy |
retro_mmus_615 ,
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