RetrogeneDB ID: retro_mputfur_1076

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897008.1:2100288..2101071(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000012419
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1076
AAATTATCAAGGATGGTGTATCCTCAACCAGATGGTCTAACACCCTCTAGGAAAGATGTCCTCGTCATGACCCCTTGGAT
GGCTCCCATCATCTGGGAGGGGACTGTCAACACGGACATCGTGAATGAGCAGTTCCAGCTCTGAACCACGACCCTCAGAT
CGACTGTATTTTCTGTGAGGTCCTACACGATCTTCCTAAAGCAGTTCTTGCAGTCCGTCAAGAGGTACTTGGTGGGACAC
AGGGTGAACTACTGTATCTTCACTGACAAGCCAGAGTATGTTCCTCATCTCAGCCAACAGAAAGGGAAGCAGATCATCAT
CCGATGCTTTGCCTGTTGGAGGGTGTCTCCACGCACGGCTCAGAGACCATCAGCAATTTCTCCCAGCAGCGCTTCCAGCG
GGAGGTGGCTTACTTCGTGTGTACGGATGTGGACGAGAGCTTCAGCAACCACATGGGCGTGGAGATCCTCGCCTCCCTGT
TCGGGACTCTCCATCTCGCCTACCTTGGGCTCAATCAGACCGACTTCCCCTATGAATGCCAGCCTCAGTCACGTGCCCAT
ATTCCTGAAGATGAGGGGACTTTTATTCCATAGGGGTCTGATTGGGGGGTCAGTGTCAGAGGTTTACAGGCTGACCAGGG
CCTGCCACGAAACCATGACGGTGGACCAAGCCAACCACATCAAGGCCGTGTGGCATGATGAGAGCCGTCTGAACAAATAC
CTCCTTTCCCACAAGCCCTCCAAGGTCCTCTCCCCCTAGTACGGGTGGCAGAATCCTCAAATG

Alignment

ORF - retro_mputfur_1076 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.9 %
• Parental protein coverage: 82.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  EVPRLAYPKAQVLNPTRADVLVMTPWFAPIIWDGVFDSTVLDAQFR--NTTIGLTVFAIKKYVVFLELFL
          ...R..YP....L.P.R.DVLVMTPW.APIIW.G.........QF....TT...TVF....Y..FL..FL
Retrocopy KLSRMVYPQPDGLTPSRKDVLVMTPWMAPIIWEGTVNTDIVNEQFQL*TTTLRSTVFSVRSYTIFLKQFL

Parental  QTAERYFMVGHRVTYYIFTDRPADVPNVPLAEGRQLVVLKVRNYARW-QEVSMHRMEMISNFSQQRFLRE
          Q...RY..VGHRV.Y.IFTD.P..VP......G.Q......R..A.W...VS.H..E.ISNFSQQRF.RE
Retrocopy QSVKRY-LVGHRVNYCIFTDKPEYVPHLSQQKGKQIII---RCFACW<EGVSTHGSETISNFSQQRFQRE

Parental  VDYLVCMDVDMKFSDQVGVEILSPLFGTLHPGFFRAARESFTYERRPQSQAYIPRDE-GDFYYAG-GFFG
          V.Y.VC.DVD..FS...GVEIL..LFGTLH..........F.YE..PQS.A.IP.DE.GDFY..G.G..G
Retrocopy VAYFVCTDVDESFSNHMGVEILASLFGTLHLAYLGLNQTDFPYECQPQSRAHIPEDE<GDFYSIG<GLIG

Parental  GSVAEVLRLTSACHRAMVIDQANGIEAVWHDESHLNRYLLYHKPTKVLSPEYLWDEQML
          GSV.EV.RLT.ACH..M..DQAN.I.AVWHDES.LN.YLL.HKP.KVLSP.Y.W.....
Retrocopy GSVSEVYRLTRACHETMTVDQANHIKAVWHDESRLNKYLLSHKPSKVLSP*YGWQNPQM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1076 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1076 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001005	1 retrocopy	retro_amel_1927,
Bos taurus	ENSBTAG00000012525	1 retrocopy	retro_btau_699,
Loxodonta africana	ENSLAFG00000010293	1 retrocopy	retro_lafr_1256,
Mustela putorius furo	ENSMPUG00000007373	1 retrocopy	retro_mputfur_307,
Mustela putorius furo	ENSMPUG00000012419	1 retrocopy	retro_mputfur_1076 ,