RetrogeneDB ID: retro_mputfur_1088

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897011.1:4120754..4121194(-)
• Located in intron of: ENSMPUG00000000373

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000008041
• Aliases: None
• Description: Processing of 4, ribonuclease P/MRP subunit [Source:UniProtKB/TrEMBL;Acc:G9KHV5]

Sequence

>retro_mputfur_1088
TCCAAATACCTTTCTGCCAGGCAGAGGAGGGAGATGCACCTTTTTGAAATTGAGCCAGAGCAGCAGAGCTACGGTCTTCT
CGCCCTCTAAGAGAACTCTGAAAACAGTACCACCAGGACCTGTGCAGTAGTCTCAACCCAGGCACGCAGCCACAGATGAT
TCAGGCCAAGCTCTTAAAGGCAGATCTTCATGGGGCTCTTGTTTAGGTCACAAAATCCAAATGCACCTCATATGTGGGTG
TTACAGGAATCCTTCTACAGGAAACAAAGCACGTTTTCAAAATCCTCACCAAAGACCACCTGAAGGTTATCCCCAAACTA
AACTGTGCGTACACAATAAACATTGATAGCTTCATTTCCAACATTTATGGAAGCAAATTCCAGCTTCTGTCAAGTTAGCG
ATCTGCCAAGAAATTCAAAGCAAAGGGAATAGTTGATCTG

Alignment

ORF - retro_mputfur_1088 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.18 %
• Parental protein coverage: 67.27 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SKGLSARQRRELHLFDIKPEQQRYSLFL-PLHELWKQYIRDLCGGLKPDTQPHMIQTKLLKADLHGALVS
          SK.LSARQRRE.HLF.I.PEQQ.Y.L...PL.EL.KQY..DLC..L.P.TQP.MIQ.KLLKADLHGALV.
Retrocopy SKYLSARQRREMHLFEIEPEQQSYGLLA<PLREL*KQYHQDLCSSLNPGTQPQMIQAKLLKADLHGALV*

Parental  VTKSKCPSYVGVTGILLQETKHVFKILTKEDRLKVIPKLNCVFAVEIDGFISYIYGSKFQLRSSERSAKK
          VTKSKC.SYVGVTGILLQETKHVFKILTK.D.LKVIPKLNC.....ID.FIS.IYGSKFQL.SS.RSAKK
Retrocopy VTKSKCTSYVGVTGILLQETKHVFKILTK-DHLKVIPKLNCAYTINIDSFISNIYGSKFQLLSS*RSAKK

Parental  FKAKGTADL
          FKAKG..DL
Retrocopy FKAKGIVDL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1088 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1088 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000008041	1 retrocopy	retro_mputfur_1088 ,
Oryctolagus cuniculus	ENSOCUG00000015974	1 retrocopy	retro_ocun_1367,
Otolemur garnettii	ENSOGAG00000011168	2 retrocopies	retro_ogar_3293, retro_ogar_541,
Sorex araneus	ENSSARG00000004748	1 retrocopy	retro_sara_410,
Tupaia belangeri	ENSTBEG00000002194	6 retrocopies	retro_tbel_1225, retro_tbel_1516, retro_tbel_2043, retro_tbel_3671, retro_tbel_3821, retro_tbel_89,