RetrogeneDB ID: retro_mputfur_1096

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897012.1:6430696..6431111(-)
• Located in intron of: ENSMPUG00000011137

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C8orf33
• Ensembl ID: ENSMPUG00000005972
• Aliases: None
• Description: chromosome 8 open reading frame 33 [Source:HGNC Symbol;Acc:26104]

Sequence

>retro_mputfur_1096
AAGAAGCAAAAGAAGAAAACCCGGAACAAAGCTTCAGCGACCAATGCCATCGGAAGTCCTCTGAAAAGCGGGGCTTTGGA
GGATGCCCTTCTAAGCGCAGAGGCTCAGGTGGACCAGTTGGCCCCAGAATTGGCGTGATGCATGGGGCAGCTGGAGTTGG
GCCTCGAAATGCTGAGACCCAGTCTGAAACAGAAAGTATAGGCTGTTGGGGCAATCCCCTCCTGCCCAATGAAAGCACCC
CTATGCCAGGAGGAGGTAGCTGATGTGCTCCTTGTTTGGGGACTGCAGGGATCAGACAGAAGCCCACGGGGCGCAAAACC
TATGGGTTCTCAGGGCTGCAGCCTGCATAGGACAGGAGCAGCCTGTCACTCGGCCACTAGAAAAGAAGAGCCAAAGGGTC
TGCAGGCCGATCCAA

Alignment

ORF - retro_mputfur_1096 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.9 %
• Parental protein coverage: 59.66 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KQTKKKSRNGASVANGGGQVSEEPVSEEAPVSAEAQAEQLARELAWCVDQLELGLKMQRPSPRQKEQAAG
          K..KKK.RN.AS..N..G........E.A..SAEAQ..QLA.ELA.C..QLELGL.M.RPS..QK..A.G
Retrocopy KKQKKKTRNKASATNAIGSPLKSGALEDALLSAEAQVDQLAPELA*CMGQLELGLEMLRPSLKQKV*AVG

Parental  AIRT-LRSERTPLP-RKRQLMRSLFGDYRAQMEAERREALRVLRTAARAAQVQPVGEAARKKNGRVCRPR
          AI...L..E.TP.P.R.R.LM.SLFGD.R.Q.EA.....L.VLR.AA...Q.QPV.....KK..RVCRP.
Retrocopy AIPS<LPNESTPMP<RRR*LMCSLFGDCRDQTEAHGAQNLWVLRAAACIGQEQPVTRPLEKKSQRVCRPI

Parental  Q
          Q
Retrocopy Q

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1096 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1096 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015805	3 retrocopies	retro_dnov_1578, retro_dnov_406, retro_dnov_521,
Macaca mulatta	ENSMMUG00000016084	1 retrocopy	retro_mmul_1436,
Monodelphis domestica	ENSMODG00000028791	2 retrocopies	retro_mdom_1056, retro_mdom_388,
Mustela putorius furo	ENSMPUG00000005972	1 retrocopy	retro_mputfur_1096 ,
Rattus norvegicus	ENSRNOG00000034107	1 retrocopy	retro_rnor_436,