RetrogeneDB ID: retro_mputfur_117

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896969.1:579869..582203(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019021
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000011062
• Aliases: None
• Description: None

Sequence

>retro_mputfur_117
ATGAGTCTGCAGATCTACAATGATGAAAACGTCACTGGTGACAAAAGTGCAGAGAACTGTGAGTTCCTGTTTTCACCGCC
GGGACTATCTGTTCTTCGTCTGTCACAGAAAGAAAATGTGCCACCCAAAAGCGTACTCAAAACTATGAAAGTGACTTTCC
AGACTCCTCTGCGGGACCCACAGACACACCGGATATTGAGTCCTAGCATGAGCAGCAAGCTCGAGGCTCCTTTTGCTCTG
GAGGATACTGTTGGCTTAGAAAATTCTCCTCAAAACCAGACCCAGAAAGAGAACCAACAGTTCACCAAGGAAGTGGACAC
CAAAATGACCAATGGAATTCTCCACAAACCAATGATGGCCAATGCCATCCCCGCTCCAGCAGATGTGAGAGCAACCCCTG
AAGATTGGCAGCATTCCAGTGGGCCCACCTCAGCTCACCTGGCCAGTCTGGATCCCTCAAGCTCTCCCCAGATGCCAAAA
CGTCTTGAAAATCAAGTGGCTTCTCTAGGACAAATGACTGTGAGCCCCGAGCAAGCCTTGGAGGAAAGTGTTCATTCTTA
TTTCTCAGAAAAGAGTATTCCCTCCACCTTGGAAATCACAGAAGACCCTTCCCAGATGGCTACCCCAGACCAAACAGAAG
ACCCTCCCGAAGCCACCAGAGAAAGCCCAAACTGGGTGGCTGCTTTGTCCCCTATGACTCACCCTGCAGGAGCAGGTGGA
GAAGGGTCCCCTGTAGACCTGCCTGAAGAGCCCTCAGGTCCTGAAGATGCCACACTGGCCAGCCATCTGAAGGCTGGAGG
GGCCACAGCCCCAAGTCCTCAGAAGAAAGAAGCTGATGGCCAGAGAGCCACCTCGTGGAATGGCAGGCCCATAGAGCTAG
AATTTGATTTATCTGACAATACTACCAGCAAAACATTGCCTGCACTGAGGGAATTGGGGACGAGACCTAGCCCTAAACCT
TCCCCTAGGATGTCAGAACCACGGCAAGAAAAGGCCCCTGAGGAGGCCAGTGAGGGGCCCCTTCCCCTGCCCCGGAGGTC
TTCCAGCCTGGACTGGAACAATCTGGATGACCCAATCTTTAACCCATTTGAAGGAGGAGAGGCCCAGCCCTCAGAATGCC
CACAGAGCAGGCCAGCCGGGCCTGTGGCCAAGGAGGTGTCTGCTAGTCCCGAGGCCACGGGGCCCTCCTCTCCAAGCCTG
CAGGTGCCTTCATTCTCCTCGGATGACACGCCTGGGGTGCAGACCGCAGCCAGGACCCCAGGTGAAGCAGTCAAGGAGGG
AGCTGCGGACCCTGCAGGTGCACCAACCTCCAGGGGTGGCCTGGGCGGTGAGCCAGCACCCCCCACTCCACAGGACCTGG
AGCCCACCGCAGAGCTGGCTGAGGAGCAGTTCCGAGACCCCACTGAGGTTCTAGGCTCTGGAGCTGAGGTGGATTATCTG
GAGCAGTTTGGGGGTTCCTCGTTTAAGGAGTCAGCCCTGAGAAAACAGTATTTGTACCTCAAGTTTGACCCGCTCCTAAA
GGACAGCCCTCAGAGACCAGGGCCTGTGGCTCCAGAGACCAGCAGTGCACAGGATGTGGCCGTGCCTTCCTCAGGAAACT
TGCCAGAGGCGAAGCTCGTGGAACTTGACTTCCTGGGACCCCCAGATGCTCCCATGCTGGATCCCCCTCCCTGTGTCTTT
GGGCCTGGGGGGCCACCACTGTCCATGGGCTCCATCGTGGACGTGTTGCAGTACAGCCAGAAGGACCTGGACGCAGTGGT
GGAGACCACACGCGAGGAGAACGTGCTGCTGAGGAGCCAGTGTGAGACACTGCGCGCCAGGAACCTGGAGATGGGGAAGA
TCATGGATGGCTTTGAGGGAATCGTGTACCAGGCGATGGAGGAGGCTCAGAAGCAGAAGGAACTTGCAAAAGCAGAGATC
CAGAAGATCCTAAAGGAAAAAGAGCAGCTGACTGCAGACCTGAGCTCCATGGAAAAGTCTTTCTCTGACCTCTTCAAACG
GTTTGAGAAACAGAAGGAGGTGATTGAGGGTTACCGCAAGAATGAAGAGTTGCTGAAGAAGTGTGTGGAGGGTTACATTG
CAAGGATAGAAAAGGAGGGCCAGCGGTACCAGGCCCTGAAGGCCCATGCGGAGGAGAAGCTCCAACTGGCTAGCGAGGAG
ATTGCCCAGGTGCGCAGCAAGGCCCAAGCAGAGTCCTTGGCCTTCCAGGCCAGCCTGAGGAAGGAGCAGATGCGCATCCA
CTCACTGGAGAAGACAGTGGAGCAAAAGACTAAGGAAAATGAGGAACTGACCCGGATCTGTGATGACCTCATCTCCAAGA
TGGAGAAGATCTGA

Alignment

ORF - retro_mputfur_117 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.35 %
• Parental protein coverage: 61.61 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PEEPSGPGDATLASHLKAGGATPPSPQKKEADGQRATSWNGRPIELEFDLSDNTTSKTLPALRELGTRPS
          PEEPSGP.DATLASHLKAGGAT.PSPQKKEADGQRATSWNGRPIELEFDLSDNTTSKTLPALRELGTRPS
Retrocopy PEEPSGPEDATLASHLKAGGATAPSPQKKEADGQRATSWNGRPIELEFDLSDNTTSKTLPALRELGTRPS

Parental  PKPSPRMSEPRQEKAPEEASEGPLPLPRRSSSLDWNNLDDPIFNPFEGGEAQPSECPQSRPAGPVAKEVS
          PKPSPRMSEPRQEKAPEEASEGPLPLPRRSSSLDWNNLDDPIFNPFEGGEAQPSECPQSRPAGPVAKEVS
Retrocopy PKPSPRMSEPRQEKAPEEASEGPLPLPRRSSSLDWNNLDDPIFNPFEGGEAQPSECPQSRPAGPVAKEVS

Parental  ASPEATGPSSPSLQVPSFS-DDTPGVQTAARTPGAAVKEGAADPAGAPTSRGGLGGEPAPPTPQDLEPTA
          ASPEATGPSSPSLQVPSFS.DDTPGVQTAARTPG.AVKEGAADPAGAPTSRGGLGGEPAPPTPQDLEPTA
Retrocopy ASPEATGPSSPSLQVPSFSSDDTPGVQTAARTPGEAVKEGAADPAGAPTSRGGLGGEPAPPTPQDLEPTA

Parental  ELAEEQFRDPTEVLGSGAEVDYLEQFGGSSFKESALRKQSLYLKFDPLLKDSPQRPGPVAPETSRGLSAQ
          ELAEEQFRDPTEVLGSGAEVDYLEQFGGSSFKESALRKQ.LYLKFDPLLKDSPQRPGPVAPETS...SAQ
Retrocopy ELAEEQFRDPTEVLGSGAEVDYLEQFGGSSFKESALRKQYLYLKFDPLLKDSPQRPGPVAPETS---SAQ

Parental  DVAVPSSGNLPEAKLVELDFLGPPDAPMLDPPPCVFGPGGPPLSMGSIVDVLQYSQKDLDAAVETTREEN
          DVAVPSSGNLPEAKLVELDFLGPPDAPMLDPPPCVFGPGGPPLSMGSIVDVLQYSQKDLDA.VETTREEN
Retrocopy DVAVPSSGNLPEAKLVELDFLGPPDAPMLDPPPCVFGPGGPPLSMGSIVDVLQYSQKDLDAVVETTREEN

Parental  VLLRSQCETLRARNLEMGKIMDGFEGIVYQAMAQEEAQKQKELAKAEIQKILKEKEQLTADLSSM
          VLLRSQCETLRARNLEMGKIMDGFEGIVYQAM..EEAQKQKELAKAEIQKILKEKEQLTADLSSM
Retrocopy VLLRSQCETLRARNLEMGKIMDGFEGIVYQAM--EEAQKQKELAKAEIQKILKEKEQLTADLSSM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_117 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_117 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000005224	1 retrocopy	retro_lafr_821,
Microcebus murinus	ENSMICG00000008141	1 retrocopy	retro_mmur_402,
Mustela putorius furo	ENSMPUG00000011062	1 retrocopy	retro_mputfur_117 ,