RetrogeneDB ID: retro_mputfur_1193

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897039.1:989984..991130(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM98A
• Ensembl ID: ENSMPUG00000010098
• Aliases: None
• Description: family with sequence similarity 98, member A [Source:HGNC Symbol;Acc:24520]

Sequence

>retro_mputfur_1193
CAGGAAGGAGGTAGTCATGAGGTCTTTCAAGAGTTGAAAGGCATATGTATTGCTCTAGGAATGTCCAATCCTCCAGCCAA
TATAACTATGTTCCAGTTCTTCAGTGGGATTGAAAAAAATTAAAGGAGACATTAGCAAAGGTTCCACTTAACCATGTGGA
AAGCCTTTATTGAAGAAACCAATGAGACCAGCCCACTGGGAAAACAAAGAAGCAGTTAACCAGGCCATAGCTAATGAACA
TGAAGTTCTGAGAAAGCTGCTATTAAAAGGCTTAGATGTCACTGTCCAGTCTTTTGGTTGGTCTGACAGAGCTAAGAGTC
AGACAGAAAAAATAGCAAAGGTTTACCAGCTGAAATGCTCAGTCCTATCTCCTAAAAGTATTATTTCTGTTCCCATGTTT
TGGCTATAAGACAAGACTCATCAAAGATTTTAAGGACAAGCAGTAACTCTATAAAAGAAAAGACTGCCTTGGCCATCAAT
AAAATGTTGTTGGGTAGGGTGCCTGACAGAGGAGGTAGACCCAATGAAATTGGACCTCTACCTCCAGAGATGCCACCATG
GCAGAAAAGGTAAGACGGCCCCCAACAACAAGCAGGAGGCCAACAAGGAGGAGAGGTGGTTATGAACATTCCTCATATGA
AGGTCGAGGAGGTCATGAACAAAGAGGAGGGAGAGGTGGGTGCGGTGGCTATGACCATGATAGCTAGGGGGAGGGAGAGA
AAATAAGCATCAAGGAGGCTGGACGGATGGAGAGAATGGAAAAGGAGGTGGTGGCTACCAAGATGGTGGTCATCGAGATT
CGGGTTTCCAGCCAGGTGGCTATCATGGTGGTGGCTGCTGTGGTAGCTATCAAGGTGATGGTTATGGTGACTTCCAAACA
TCTACATACATAAAAAGTGGATACTGGGGTAGTGGATACCAGCAGGACAGTAGATACCAAGATGGTGGTCACCATGGTGA
CTGAGGCAGTGGTCGTGGAGGGAGAAGTGGTTGTAGAAGCCAAGGTGGATGTGGAGGCCAGAAAGAAGTTGGGGAGGAAG
GGGGAGCCAGAATTATCACCAAGGGGCCCAATTTGAATAGCACTTCCAGCATGGAGGTTATCAGTGTAATCATTTTGGAT
TTGATCAGGGAAGACATTATCCTAGT

Alignment

ORF - retro_mputfur_1193 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.28 %
• Parental protein coverage: 74.08 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  QEGGGSEVFQELKGICIALGMSKPPANITMFQFFSGIEK-KLKETLAKVPPNHV-GKPLLKKPMGPAHWE
          QEGG..EVFQELKGICIALGMS.PPANITMFQFFSGIEK.KLKETLAKVP.NHV.GKPLLKKPM.PAHWE
Retrocopy QEGGSHEVFQELKGICIALGMSNPPANITMFQFFSGIEK<KLKETLAKVPLNHV<GKPLLKKPMRPAHWE

Parental  KIEAINQAIANEYEVRRKLLIKRLDVTVQSFGWSDRAKSQTEKLAKVYQPKRSVLSPKSTISV-AHLLAA
          ..EA.NQAIANE.EV.RKLL.K.LDVTVQSFGWSDRAKSQTEK.AKVYQ.K.SVLSPKS.ISV..H.LA.
Retrocopy NKEAVNQAIANEHEVLRKLLLKGLDVTVQSFGWSDRAKSQTEKIAKVYQLKCSVLSPKSIISV<SHVLAI

Parental  RQDLSKILRTSSGSIREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQDGPQQQAGGRGGG-R
          RQD.SKILRTSS.SI.EKTA.AINK.L.GRVPDRGGRPNEI.P.PPEMPPWQKR.DGPQQQAGG..GG.R
Retrocopy RQDSSKILRTSSNSIKEKTALAINKMLLGRVPDRGGRPNEIGPLPPEMPPWQKR*DGPQQQAGGQQGG<R

Parental  GGYEHSSYGGRGGHEQGGGRGGRGGYDHGS-RGGGRGNKHQGGWTDGGSG-GGGGYQDGGYRDSGFQPGG
          GGYEHSSY.GRGGHEQ.GGRGG.GGYDH.S..GGGR.NKHQGGWTDG..G.GGGGYQDGG.RDSGFQPGG
Retrocopy GGYEHSSYEGRGGHEQRGGRGGCGGYDHDS<LGGGRENKHQGGWTDGENGKGGGGYQDGGHRDSGFQPGG

Parental  YHGGSHSGSYQGGGYGGFQTSTYTGSGYQGGGYQQDNRYQDGGHHNDRGSGRGGRGGRGGRGGRGGQ-GG
          YHGG...GSYQG.GYG.FQTSTY..SGY.G.GYQQD.RYQDGGHH.D.GSGRGGR.G....GG.GGQ...
Retrocopy YHGGGCCGSYQGDGYGDFQTSTYIKSGYWGSGYQQDSRYQDGGHHGD*GSGRGGRSGCRSQGGCGGQ<ER

Parental  GWGGRGSQNYHQGGQFEQHFQHGGYQYNHSGFGQGRHYTS
          .WGGRGSQNYHQG.QFE.HFQHGGYQ.NH.GF.QGRHY.S
Retrocopy SWGGRGSQNYHQGAQFE*HFQHGGYQCNHFGFDQGRHYPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1193 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1193 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005268	2 retrocopies	retro_amel_1607, retro_amel_1845,
Choloepus hoffmanni	ENSCHOG00000000476	1 retrocopy	retro_chof_691,
Mustela putorius furo	ENSMPUG00000010098	1 retrocopy	retro_mputfur_1193 ,
Rattus norvegicus	ENSRNOG00000030328	1 retrocopy	retro_rnor_614,