RetrogeneDB ID: retro_mputfur_1297

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897071.1:137893..138683(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ILK
• Ensembl ID: ENSMPUG00000005495
• Aliases: None
• Description: integrin-linked kinase [Source:HGNC Symbol;Acc:6040]

Sequence

>retro_mputfur_1297
ATGGATGACATTTTCACCCAGTGGTGGGAGGGCAATGTGGTGGCCATTCACCTGTAAGCTGGACAACACGAAAACAGCCT
CAACCAGGAGATGATCATGGCTTCTCCCCCTTGCCCTGGCCTGCCAAGAGGGCTGTTGTCCTGTGGTTGAGATGCTGATC
ATGTGGGGAACATGAATCAATGTGATGAACCATGGTGATGAACCCCCTAGCACCTGGCAGCTGGTCCCAGACACCGTGAT
ATTGTGCAGAAGCTGCAGCAGTATAAAGCTGACATCAATGCAGTGAATGTACATAGAAATGTGCCCCTGCATTATGCCTG
TTTTTTTGGGCCAACATCGGGTTGCAGAGGACATGGTGGCTAATGGGGCTCTTTGTCAGCATTTATAACAAGTATGGAGA
GATGTCCAAGGACAAAGCCAAGGACCTCTGAGGGATCTCTTCTGAGAGCAGGCAGAGAAGATGGGCCACAACTTTAACCA
TATTTCATACAAGGACACATTTTGGAAAATAACCACCCGCATTTGGCCCGAGAATGGGACTCTGCACAAACATGCTGGCA
CTGACTTCAAACAGCTCAACTTTCTGGCAAAATTCAATGACCATCACTCTGGAGAGCTATGTAAGGGCTGTTGACAGGTC
AATGACATTGTCATGAAGATGCTAAAGGTTTGAAACTGGAGTACAAGGAAGAGCAGGGACTTTAATGAGGAATGTCCCCA
TCTAAGGATTTTCTCGCATCCAGATGTTCTCCCTGTGCTAGGTGCTCGTCAGTCTCTACCTTCTCCTCAC

Alignment

ORF - retro_mputfur_1297 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.96 %
• Parental protein coverage: 58.41 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  MDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHW-ACREGRSAVVEMLIMRGARINVMNRGDD
          MDDIFTQ..EGN.VA..L.....EN.LNQ.GDDHGFSPL.W.AC.EG...VVEMLIM.G..INVMN.GD.
Retrocopy MDDIFTQWWEGNVVAIHL*AGQHENSLNQ<GDDHGFSPLPW<ACQEGCCPVVEMLIMWGT*INVMNHGDE

Parental  -TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-QDQVAEDLVANGAL-VSICNKYGEM
          .TP.HLAA...HRDIVQKL.QYKADINAVN.H.NVPLHYACF.G.Q..VAED.VANGAL.VSI.NKYGEM
Retrocopy <TP*HLAAGPRHRDIVQKLQQYKADINAVNVHRNVPLHYACFFG>QHRVAEDMVANGAL>VSIYNKYGEM

Parental  PVDKAK-APLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDYKQLNFLAKLNENHS
          ..DKAK..PLR.L..E.AEKMG.N.N.I.YKDTFWK.TTR..P.NGTL.KH.G.D.KQLNFLAK.N..HS
Retrocopy SKDKAK<GPLRDLF*EQAEKMGHNFNHISYKDTFWKITTRIWPENGTLHKHAGTDFKQLNFLAKFNDHHS

Parental  GELWKGCWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPH
          GEL.KGC.Q.NDIV.K.LKV..WSTRKSRDFNEECP.LRIFSHP.VLPVLGA.QS.P.PH
Retrocopy GELCKGC*QVNDIVMKMLKV*NWSTRKSRDFNEECPHLRIFSHPDVLPVLGARQSLPSPH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1297 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1297 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016283	1 retrocopy	retro_amel_1547,
Mustela putorius furo	ENSMPUG00000005495	1 retrocopy	retro_mputfur_1297 ,
Mus musculus	ENSMUSG00000030890	1 retrocopy	retro_mmus_1119,