RetrogeneDB ID: retro_mputfur_1471

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897152.1:1122255..1122703(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NIPSNAP3B
• Ensembl ID: ENSMPUG00000007103
• Aliases: None
• Description: nipsnap homolog 3B (C. elegans) [Source:HGNC Symbol;Acc:23641]

Sequence

>retro_mputfur_1471
TTTGTTCATGGAACAGAAGTTCAGAAAGGTTTGACCAAAAATAAAGAAGGCTAGGAACAATTTCTCATTTCAAATTTGGC
TGTCATTGATGAACAAGAGTTTGAGATTACTTATGTGGTACCATGGTCCAAAATAGAAAAACCTCCAAAGGGGTTCATGA
ACTGGTTGTTTTCCAGATGAAACTTGATGGGCCAGCTCTGGGGGGGTGATCTGTCTAAGAGGGCAGTTAATGCCCCTCTA
GGTTTAAGCTACATAAAACCAACTGGTGTTCTCCACCCAGAATGAGGAGCAACCACTAGAGTTTGCATTCTTTGGTGAAA
TGAGTGTGGATAGTCATGTAGCTGGAAGACAACAGTCTCGTGAGAACCTCAGACTTGTGGTGGCTGTTTGGAAAAATGTC
AACTACCAAGTGTCACAGCAGAATATGCTTCCGATTCCTATGTCATTT

Alignment

ORF - retro_mputfur_1471 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.84 %
• Parental protein coverage: 60.98 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  FAHRTEVRKAVAKDKEW-QQSFIPNLGLTDKQEIEITYLVPWCKLE-KPAKEGVYELVSFQMKPGGPALW
          F.H.TEV.K...K.KE...Q..I.NL...D.QE.EITY.VPW.K.E.K..K.GV.ELV.FQMK..GPAL.
Retrocopy FVHGTEVQKGLTKNKEG*EQFLISNLAVIDEQEFEITYVVPWSKIE<KTSK-GVHELVVFQMKLDGPALG

Parental  G-DAFKRAINAHVDLGYSKLIGVFHTEYGELNRVHVLWW-NASADSRAAGRHQSHEDPRVVAAVRESVNY
          G.D..KRA.NA...L.Y.K..GV.H.E.G...RV..L.W...S.DS..AGR.QS.E..R.V.AV...VNY
Retrocopy G>DLSKRAVNAPLGLSYIKPTGVLHPE*GATTRVCIL-W>EMSVDSHVAGRQQSRENLRLVVAVWKNVNY

Parental  LVSQQNMLLIPTSF
          .VSQQNML.IP.SF
Retrocopy QVSQQNMLPIPMSF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1471 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1471 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000014253	1 retrocopy	retro_acar_133,
Ailuropoda melanoleuca	ENSAMEG00000005118	1 retrocopy	retro_amel_552,
Dasypus novemcinctus	ENSDNOG00000000943	1 retrocopy	retro_dnov_482,
Equus caballus	ENSECAG00000008088	1 retrocopy	retro_ecab_978,
Echinops telfairi	ENSETEG00000016120	1 retrocopy	retro_etel_1335,
Mustela putorius furo	ENSMPUG00000007103	1 retrocopy	retro_mputfur_1471 ,