RetrogeneDB ID: retro_mputfur_1474

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897154.1:950397..951490(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LIN9
• Ensembl ID: ENSMPUG00000004573
• Aliases: None
• Description: lin-9 homolog (C. elegans) [Source:HGNC Symbol;Acc:30830]

Sequence

>retro_mputfur_1474
ACTGTGGAGATGCCTTTCAGAAATTCAAAATGAGGTTGACTCTTTTCCAATGAAAATGACAGACAGATAAAAAATGGTAA
CCCAAAAGAAACAGGAAAGTTGCAATGGTCCCACCAAACTTTACAGTGGACAATCACACCAGATAAGAAAGCCTCACAGA
AGATTGGTTTCCAATTACATAACCAACTCAAGCTTCCCAAAGCACATAAATGGTGCATATATGAATGGTTCTATTCAACT
ATAGATAAACAACTGTTTGAAGGCTATGATGACTTCTGTGTCTTTCTGAAGGAATCCTTTCCTAATTTAAAAACAAGAAA
GTTACAAGGGTAGAATGGGGAATAATCAGGTGACTTATGGGAAAATATGGAGACTTTCTTGTTCATGTTTTGAGGAAGAG
AGACCAGCGTTAAAACAGAAACGACAGAAAATATGACTCTTACAAAAAAGGCAAGTTGCAGATGGTTCCCAGTTCAAAGA
TCTCCCAGATGAAATTCCTTTGCCCCTGTTTATTGGAACCAAAGTTATAGTTCGATTACGTGGTGTTCATGATGGTCTCT
TCATAGTTGCTGTGGATACTTTTAATCCTCCTTATAGAGTAACTTTTGATAGGTAGGGCTTGGCAACCATACCATACCTG
ACTATGAAGTTCTTAGTAATGAGCTGCATGAGACGATGCCAGTTGCTGTCTTTGACAAAATCAGGGGCCTTCTTGATTCT
TTATGACTCCACCATGGTTACATTGCATTCCTCCCCTCCAGTCACCAATTAGGGATAATGATCCTGTACTAGCACAGTCA
CCTTGGAGAAGTAAGATTCCTGGCTCTGACACTGAAATGCTAGGTCATTTTCCAGTACAATTCCTCATCCAAGTGAACAC
TTTGTCAAAAGTTCTCATGATTAAAAAGGGACATATCAAAAAATTAAGAGCAATGAACACAGAAGCAAAAAAATTGAAAT
CCTATTGCATGCCCATTGGCATTGAATTTCGGCAGAGTTATGCAACCATCATTCTGGAGCTTGAGCAACTCAACAAGGAC
CTCGACAAAGTTTGCATGAAGTGCAGCACTGCTATGAGCCTGCTCCATCCAGA

Alignment

ORF - retro_mputfur_1474 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.73 %
• Parental protein coverage: 67.09 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 8

Retrocopy - Parental Gene Alignment:

Parental  TVEMPFRNSKRSRLFSDEDDRQINTRSPK-RNQRVAMV-PQKFTATMS-TPDKKASQKIGFRLRNLLKLP
          TVEMPFRNSK...LFS.E.DRQI....PK.RN..VAMV.P.K.....S.TPDKKASQKIGF.L.N.LKLP
Retrocopy TVEMPFRNSK*G*LFSNENDRQIKNGNPK<RNRKVAMV<PTKLYSGQS<TPDKKASQKIGFQLHNQLKLP

Parental  KAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKL-TRVEWGKIRRLMGKPR-RCSSAFFEEE
          KAHKWCIYEWFYS.IDK.LFEG..DFCV.LKESFPNLKTRKL.TRVEWG.IR.LMGK...R.S...FEEE
Retrocopy KAHKWCIYEWFYSTIDKQLFEGYDDFCVFLKESFPNLKTRKL<TRVEWGIIR*LMGKYG<RLSCSCFEEE

Parental  RSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTFNATYRV
          R.ALKQKRQKI.LLQ.R.VAD.SQFKDLPDEIPLPL.IGTKV..RLRGVHDGLF...I.AVDTFN..YRV
Retrocopy RPALKQKRQKI*LLQKRQVADGSQFKDLPDEIPLPLFIGTKVIVRLRGVHDGLF---IVAVDTFNPPYRV

Parental  TFDR-AGLGTHTIPDYEVLSNEPHETMPIAAFG-QKQRPSRFFMTPPRLHYTPPLQSPITDNDPLLGQSP
          TFDR..GLG.HTIPDYEVLSNE.HETMP.A.F..Q.Q.PS.FFMTPP.LH..PPLQSPI.DNDP.L.QSP
Retrocopy TFDR<VGLGNHTIPDYEVLSNELHETMPVAVFD<QNQGPS*FFMTPPWLHCIPPLQSPIRDNDPVLAQSP

Parental  WRSKISGSDTETLGGFPVEFLIQVTKLSKILMIKKEHIKKLREMNTEAEKLKSYSMPIGIEFQRRYATIV
          WRSKI.GSDTE.LG.FPV.FLIQV..LSK.LMIKK.HIKKLR.MNTEA.KLKSY.MPIGIEF...YATI.
Retrocopy WRSKIPGSDTEMLGHFPVQFLIQVNTLSKVLMIKKGHIKKLRAMNTEAKKLKSYCMPIGIEFRQSYATII

Parental  LELEQLNKDLNKV-LHKVQQYCYELAPDQ
          LELEQLNKDL.KV.LH.V.Q.CYE.AP..
Retrocopy LELEQLNKDLDKV<LHEV-QHCYEPAPSR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1474 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1474 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000002421	1 retrocopy	retro_lafr_862,
Mustela putorius furo	ENSMPUG00000004573	1 retrocopy	retro_mputfur_1474 ,
Rattus norvegicus	ENSRNOG00000023304	1 retrocopy	retro_rnor_1047,