RetrogeneDB ID: retro_mputfur_1568

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897260.1:55041..55847(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZCCHC4
• Ensembl ID: ENSMPUG00000016727
• Aliases: None
• Description: zinc finger, CCHC domain containing 4 [Source:HGNC Symbol;Acc:22917]

Sequence

>retro_mputfur_1568
CATTATAGCATGTTTAACAATCATGTCTTTGATAGAAAGACTGCGTTTGAAGTATGAAGAACATTTTCATGGGAAGATAA
AGGTGAGGGAGTCATTATGGTGACAGATCCTCCTTTTGGTGGTTTTGCTGAACCTCTGGTTATTACATTCAAGAAATAAA
TTGCTCTGTGGAAAGAAGATCAAAACCAAGAAAACCAACCACCCATATTCTGGATTTTTCCCCTAATTTTTTCAATCCCA
AAGTTGTCTGTTTTTTCCAAGCTCCTGCATGCTGAATTACCAGATAGATTATGATAATCGTATACCTTATACACATGGAA
AGACAGGTTGAAAACAGTCTCCTGTGCATATTTTCACCAATATTCCAACCAGCAAAATAATCCTTCCTATTGAAGAAGGG
TACAGATTTTGCCTCTGTGTTAATGATGTTTCCTAGAAAATCAACACTGTGAGCACTGTAATCCTTATACATCCAAGGAT
GACAAGAATGGAACCATTGCTTTTCCTGCATAAAGTGTCTAAAACCTTACTGGATCCACTGTAGCATTTGCAGTCATTGT
GCTCTTCCAGATCATTCTCACATGGGCCCCAAAGATGGCTGCTTTATTTGTGGTGAATTAGGTAATAAAAGTAGTACTTG
TCCTAACATCTCTATATCTAAGAAAGTGAACAAAGCTATCAACATGCAGAAGCAAAGAAAAAGTAATAAGATGAAAATGG
AGACCACTAAAGGACAATCCATGAATCATACATCTGTTACAAGGAAGAAAAAAAGGAGAGAAAGAGCCCATCTTTATCTT
TGCTCT

Alignment

ORF - retro_mputfur_1568 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.29 %
• Parental protein coverage: 53.31 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  HYNMFNHHFFDGKAALEVCRTFLQEDKGEGVIMVTDPPFGGLVEPLAVTFKKLIAMWKEGQSQDSSQKEL
          HY.MFN.H.FD.K.A.EV.RTF..EDKGEGVIMVTDPPFGG..EPL..TFKK.IA.WKE.Q.Q.......
Retrocopy HYSMFNNHVFDRKTAFEV*RTFSWEDKGEGVIMVTDPPFGGFAEPLVITFKK*IALWKEDQNQENQP---

Parental  PIFWIFPY-FFEFRIRQFFPSFCMLDYQVVDYDNHALYKHGKTGRKQSPVRIFTNIPPNKIILPSEEGYR
          PIFWIFP..FF......FFPS.CML.YQ..DYDN...Y.HGKTG.KQSPV.IFTNIP..KIILP.EEGYR
Retrocopy PIFWIFPL>FFQSQSCLFFPSSCMLNYQI-DYDNRIPYTHGKTG*KQSPVHIFTNIPTSKIILPIEEGYR

Parental  FCPLCQRYVS-LENQHCEHCNSCTSKDGR-KWNHCFLCKKCVKPSWIHCSICSHCALPDHSCGGPKDGCF
          FC.LC...VS.LENQHCEHCN..TSKD....WNHCF.C.KC.KP.WIHCSICSHCALPDHS..GPKDGCF
Retrocopy FC-LCVNDVS<LENQHCEHCNPYTSKDDK<EWNHCFSCIKCLKPYWIHCSICSHCALPDHSHMGPKDGCF

Parental  ICGELDHKRSTCPKITTSKKVNKAVRKQKQRKSNKMKMGTTKGQSMNHTSVTRKKRRRERAHQYLCS
          ICGEL..K.STCP.I..SKKVNKA...QKQRKSNKMKM.TTKGQSMNHTSVTRKK.RRERAH.YLCS
Retrocopy ICGELGNKSSTCPNISISKKVNKAINMQKQRKSNKMKMETTKGQSMNHTSVTRKKKRRERAHLYLCS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1568 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1568 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000018120	1 retrocopy	retro_amel_1902,
Myotis lucifugus	ENSMLUG00000004225	1 retrocopy	retro_mluc_1360,
Mustela putorius furo	ENSMPUG00000016727	1 retrocopy	retro_mputfur_1568 ,