RetrogeneDB ID: retro_mputfur_1618

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897378.1:143400..143975(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RGN
• Ensembl ID: ENSMPUG00000013105
• Aliases: None
• Description: regucalcin [Source:HGNC Symbol;Acc:9989]

Sequence

>retro_mputfur_1618
GCCAGTTCTCCAAGGGTCACTGACACCAAGACAGCTTCCGGTTAACAATGTCTTCCATTAAAATCGAATGTGTTTTGCGG
GAGAATTGCTGGGGCAGGGAGTCTCCGGTGCAGGAGGAGGTATCCATCTCACCGCCCTTTATAGATATTCTTGCAAGAAA
CCTTTGCCAGTGGGATTCGCTCAGCAAGTGCGTGCAGCAAGTGACTGTGGATGCCCCATTGGCTCTGATCCCTTCACCAG
GGAGGAGGCTATGTCACCACCACAGGAACAAAGTTCTGTGCTCTGAACTGGGAAGATCACTCAGCAGTTTCCCTGGCCAC
AGGAGATAAAGACCAGAAAAACAATTGATTCAATAATGGGAAGGTAGATCCTGTTGGGAGATATTTTGCTGGCATCATGG
CCAAGGAGACCACCCAACAGCTGTGGGGTGGCACCACAGGTCCCTGTACTCCCTCTTTCTGGACCACCAAGTGGAAAAGT
ATTTTGAGCAGGTGGACATCTCCAATGGTTTGGATTGATCCCTGGATCACAAAATCTTCTATTACATCGGCAGCCTGTCT
TACTAGTTGGATGCC

Alignment

ORF - retro_mputfur_1618 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.56 %
• Parental protein coverage: 55.46 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  ASSLRVTD-NQDSSLFTMSSIKIECVLRENCRCGESPVWEEASSSLLFVDIPAKKVCRWDSLSKRVQQVT
          ASS.RVTD..QDS...TMSSIKIECVLRENC...ESPV.EE.S.S..F.DI.A...C.WDSLSK.VQQVT
Retrocopy ASSPRVTD<HQDSFRLTMSSIKIECVLRENCWGRESPVQEEVSISPPFIDILARNLCQWDSLSKCVQQVT

Parental  LDA-PVSSV-ALRQGGGYVATVGTKFCALNWEDHSAVALASVDEDKRNNRFNDGKVDPAGRYFAGTMAEE
          .DA.P..S...L.QGGGYV.T.GTKFCALNWEDHSAV.LA..D.D..NN.FN.GKVDP.GRYFAG.MA.E
Retrocopy VDA<PIGSD<SLHQGGGYVTTTGTKFCALNWEDHSAVSLATGDKDQKNN*FNNGKVDPVGRYFAGIMAKE

Parental  TA-PAVLERHQGSLYSLFPDHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDA
          T..P.....H..SLYSLF.DH.VEKYF.QVDISNGLD.SLDHKIFYYI.SLSY..DA
Retrocopy TT<PTAVGWHHRSLYSLFLDHQVEKYFEQVDISNGLD*SLDHKIFYYIGSLSY*LDA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1618 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1618 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013028	1 retrocopy	retro_amel_915,
Canis familiaris	ENSCAFG00000014821	1 retrocopy	retro_cfam_685,
Monodelphis domestica	ENSMODG00000000375	1 retrocopy	retro_mdom_1797,
Mustela putorius furo	ENSMPUG00000013105	1 retrocopy	retro_mputfur_1618 ,