RetrogeneDB ID: retro_mputfur_1646

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897700.1:4479..6132(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000010658
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SLC30A5
• Ensembl ID: ENSMPUG00000014669
• Aliases: None
• Description: solute carrier family 30 (zinc transporter), member 5 [Source:HGNC Symbol;Acc:19089]

Sequence

>retro_mputfur_1646
AGGTGTGGCAGATCACAAGCTTCCAGAAAACTCTCTGTAGATGTTGGTGGAGCCAAACGTCTTCAAGCTTTATCCCATCT
TGTTTCTGTGCTTCTCTTGTGCCCATGGGTCATTGTTCTTTCTGTGACAACTGAGAGTAAAGTCGAGTCTTGGTTTTCTC
TCATAATGCCTTTCACAACAGTTATCTTTTTTGTCATGATCCTGGATTTCTATGTCGATTCCATTTGTTCAGTCAAAATG
GAAGTTTCCAAATATGCCTGCTATGGATCCTTTCCCATTTTTATTAGTGCTCTACTTTTTGGAAATTTTTGGACACATCC
AATAACAGACCAGCTTCGAGCTTTGAACAAAGCAGCACACCAGGAAAGCACTGAACATGTCCTGTCTGGAGGAGTGGTAG
TGAGCGCTATATTCTTCATTTTGTCTGCCAACATCTTATCATCTCCTTCCAAGAGAGGGCAGAAAGGCACCCTAGTTGGA
TATTCTCCTGAAGGAACACCTCTCTATAATTTCATGGGTGATGCTTTCCAGCAGAGCTCCCAATCGATCCCCAGGTTTAT
TAAGGAATCACTAAAACAAATTCTTGAGGAGAATGACTCTAGGCAGATCTTTTACTTCTTATGTTTGAATCTGCTTTTTA
CCTTTGTTGAATTATTCTATGGTGTGTTGACCAATAGTCTGGGTCTGATCTCAGATGGATTTCACATGCTCTTTGACTGC
TCTGCTTTGGTCATGGGTCTTTTTGCGGCCTTGATGAGTAGATGGAAAGCAACTCGGATTTTTTCCTATGGGTATGGCCG
AATAGAAATTCTCTCTGGATTTATTAATGGACTTTTTCTAATGGTAATAGCCTTTTTTGTGTTTATGGAGTCAGTGGCTA
GATTAATTGATCCTCCAGAATTAGACACACATATGTTAACACCAGTCTCAGTTGGAGGGCTGATAGTAAACCTTACTGGT
ATCTGTGCCTTTAGCCATGCCCATAACCATAACCATGGAGCTTCTCAGGGAAGCTGTCATTCATCTGATCACAGTCATTC
CCACCATATGCATGGACACAGTGACCATGGGCATGGTCACAGCCACGGATCTGCAGGCAGAGGCATGAATGCTAACATGA
GGGGTGTATTTCTTCATGTTTTGGCAGACACACTTGGCAGTATTGGTGTAATTGTATCCACAGTTCTTAGAGTGAAGTTT
AGATGGTTCATTCCTGATCCCCTGTGTTCTCTTTCTCTCTTTATTGCTATATTAATATTTCTCAGTGTTGTTCCACTGAT
TAAAGATGCCTGTCAGGTTCTACTTTTGAGACTGCCACCAGAATATGAAAAAGAGCTACATCTTGCTTTAGAAAAGATAC
AGAAAATTGAAGGATTAATATCATACCGATACCCTCATTTTTGGCATCATTCAGCCAGTGTTGTGGCAGGAACAGTTCAT
ATACAGGTGACATCAGATGTGCTGGAACAAAGAATTGTACAGCAGGTTACAGGAATACTTAAAGATGCTGGAGTAAACAA
TTTAACAATTCAAGTGGAAAAAGAGGCATATTTTCAACATATGTCTGGCCTAAGTACTGGATTTCATGATGTTCTAGCTA
TGACAAAACAAATGGAGTCCATGAAATACTACAAAGATGGTACTTACATCATG

Alignment

ORF - retro_mputfur_1646 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.92 %
• Parental protein coverage: 81.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KVGFHTASRKLSVDVGGAKRLQALSHLVSVLLLCPWVIVLSVTTESKVESWFSLIMPFTTVIFFVMILDF
          ..G...ASRKLSVDVGGAKRLQALSHLVSVLLLCPWVIVLSVTTESKVESWFSLIMPFTTVIFFVMILDF
Retrocopy RCGRSQASRKLSVDVGGAKRLQALSHLVSVLLLCPWVIVLSVTTESKVESWFSLIMPFTTVIFFVMILDF

Parental  YVDSICSVKMEVSKYACYGSFPIFISALLFGNFWTHPITDQLRALNKAAHQESTEHVLSGGVVVSAIFFI
          YVDSICSVKMEVSKYACYGSFPIFISALLFGNFWTHPITDQLRALNKAAHQESTEHVLSGGVVVSAIFFI
Retrocopy YVDSICSVKMEVSKYACYGSFPIFISALLFGNFWTHPITDQLRALNKAAHQESTEHVLSGGVVVSAIFFI

Parental  LSANILSSPSKRGQKGTLIGYSPEGTPLYNFMGDAFQHSSQSIPRFIKESLKQILEENDSRQIFYFLCLN
          LSANILSSPSKRGQKGTL.GYSPEGTPLYNFMGDAFQ.SSQSIPRFIKESLKQILEENDSRQIFYFLCLN
Retrocopy LSANILSSPSKRGQKGTLVGYSPEGTPLYNFMGDAFQQSSQSIPRFIKESLKQILEENDSRQIFYFLCLN

Parental  LLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAALMSRWKATRIFSYGYGRIEILSGFINGLFL
          LLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAALMSRWKATRIFSYGYGRIEILSGFINGLFL
Retrocopy LLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFAALMSRWKATRIFSYGYGRIEILSGFINGLFL

Parental  MVIAFFVFMESVARQVQIPLLVKTLLFPVSVGGLIVNLIGICAFSHAHNHNHGASQGSCHSSDHSHSHHM
          MVIAFFVFMESVAR....P.L....L.PVSVGGLIVNL.GICAFSHAHNHNHGASQGSCHSSDHSHSHHM
Retrocopy MVIAFFVFMESVARLIDPPELDTHMLTPVSVGGLIVNLTGICAFSHAHNHNHGASQGSCHSSDHSHSHHM

Parental  HGHSDHGHGHSHGSAGRGMNANMRGVFLHVLADTLGSIGVIVSTVLIEQFGWFIADPLC--SLFIAILIF
          HGHSDHGHGHSHGSAGRGMNANMRGVFLHVLADTLGSIGVIVSTVL...F.WFI.DPLC..SLFIAILIF
Retrocopy HGHSDHGHGHSHGSAGRGMNANMRGVFLHVLADTLGSIGVIVSTVLRVKFRWFIPDPLCSLSLFIAILIF

Parental  LSVVPLIKDACQVLLLRLPPEYEKELHLALEKIQKIEGLISYRDPHFWRHSASVVAGTIHIQVTSDVLEQ
          LSVVPLIKDACQVLLLRLPPEYEKELHLALEKIQKIEGLISYR.PHFW.HSASVVAGT.HIQVTSDVLEQ
Retrocopy LSVVPLIKDACQVLLLRLPPEYEKELHLALEKIQKIEGLISYRYPHFWHHSASVVAGTVHIQVTSDVLEQ

Parental  RIVQQVTGILKDAGVNNLTIQVEKEAYFQHMSGLSTGFHDVLAMTKQMESMKYYKDGTYIM
          RIVQQVTGILKDAGVNNLTIQVEKEAYFQHMSGLSTGFHDVLAMTKQMESMKYYKDGTYIM
Retrocopy RIVQQVTGILKDAGVNNLTIQVEKEAYFQHMSGLSTGFHDVLAMTKQMESMKYYKDGTYIM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1646 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1646 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000014669	1 retrocopy	retro_mputfur_1646 ,