RetrogeneDB ID: retro_mputfur_191

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: AEYP01110567.1:3531..5460(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DDB1
• Ensembl ID: ENSMPUG00000014200
• Aliases: None
• Description: damage-specific DNA binding protein 1, 127kDa [Source:HGNC Symbol;Acc:2717]

Sequence

>retro_mputfur_191
CTGAACGTTGACAGCAATGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTCACCAATTTAGGACCCATTGTGGACAT
GTGCGTGGTGGATCTGGAGAGGCAGGGGCAGGGGCAGCTGGTTACTTGCTCCGGGGCTTTCAAGGAAGGTTCCTTGAGAA
TCATCCGGAATGGAATTGTAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAGGTCTGTGGCCGCTGCGGTCT
GACCCTAACCGGGAGACTGATGACACTCTGGTGCTCTCTTTTGTGGGCCAGACAAGAGTTCTCATGTTAAATGGAGAAGA
GGTGGAAGAAACCGAACTGATGGGTTTCGTGGATGATCAGCAGACTTTCTTCTGTGGCAATGTGGCTCACCAGCAACTCA
TCCAGATCACTTCAGCATCTGTGAGGTTGGTCTCTCAGGAACCCAAAGCTCTGGTCAGTGAGTGGAAAGAGCCTCAGGGC
AAGAACATCAGTGTGGCCTCCTGCAACAGCAGCCAGGTGGTCGTAGCGGTGGGAAGGGCCCTCTACTACCTGCAGATCCA
TCCTCAGGAGCTCCAGCAGATCAGCCATACAGAGATGGAACACGAAGTGGCCTGCTTGGACATCACCCCGCTGGGCGACA
GCAATGGGCTGTCCCCTCTTTGTGCCATTGGCCTCTGGACAGACATCTCAGCGCGTATCTTGAAGCTGCCCTCTTTTGAG
CTACTGCACAAAGAGATGCTGGGTGGAGAGATCATTCCTCGCTCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCT
CCTTTGTGCCTTGGGAGATGGGGCACTTTTCTACTTCGGACTCAACATTGAGACAGGCCTGTTGAGCGACCGTAAGAAGG
TGACCCTGGGCACCCAGCCCACGGTGTTGAGGACTTTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGC
CCCACTGTCATCTACAGCAGCAACCACAAATTGGTCTTCTCCAATGTCAACCTCAAGGAAGTCAACTACATGTATCCCCT
CAATTCTGATGGCTATCCTGACAGCCTGGCACTGGCCAACAACAGCACCCTCACCATTGGCACCATTGACGAGATCCAGA
AGCTGCATATCCGCACGGTTCCCCTCTATGAGTCTCCCAGGAAGATCTGCTATCAGGAAGTGTCCCAGTGCTTCGGGGTC
CTCTCCAGCCGTATCGAAGTCCAGGACATGAGTGGCAGCACCACGGCCCTGAGGCCCAGTGCCAGCACCCTGTCCAGCAG
TGTCAGCTCCAGCAAGCTGTTCTCCAGCAGCACCGTGCCGCATGAGACCTCCTTCGGAGAGGAGGTGGAGGTGCACAACC
TCCTCATCATTGACCAGCACACCTTCGAAGTGCTTCATGCCCACCAGTTTCTGCAGAATGAGTATGCCCTCAGCCTGGTC
TCCTGCAAGCTGGGCAAAGACCCCAACATGTACTTCATCGTGGGCACGGCCATGGTGTATCCCGAAGAGGCGGAGCCCAA
GCAGGGTTGCATCGTGGTCTTTCAGTATTCCGATGGAAAACTACAGACTGTGGCCGAGAAGGAAGTGAAGGGAGCCGTGT
ACTCCATGGTGGAATTTAACGGGAAGCTGTTAGCCAGCATCAACAGCACGGTGCGGCTTTATGAGTGGACAACAGAAAAG
GAGCTTCGCATGGAGTGCAATCACTACAACAACATCATGGCCCTCTACCTGAAGACCAAGGGCAACTTCATCCTGGTGGG
CGACCTGATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCCATGGAGGGGAACTTTGAAGAGATCGCTCGAGACTTTAATC
CTAACTGGATGAGTGCTGTGGAGATCTTGGATGATGACAATTTCCTGGGGGCCGAAAATGCCTTTAACTTGTTTGTGTGT
CAGAAGGAT

Alignment

ORF - retro_mputfur_191 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.9 %
• Parental protein coverage: 57.9 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLP
          LNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGI.IHEHASIDLP
Retrocopy LNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIVIHEHASIDLP

Parental  GIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSAS
          GIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSAS
Retrocopy GIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSAS

Parental  VRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITP
          VRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQEL.QISHTEMEHEVACLDITP
Retrocopy VRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELQQISHTEMEHEVACLDITP

Parental  LGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG
          LGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG
Retrocopy LGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG

Parental  LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMVRILSF
          LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM....S.
Retrocopy LNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMYPLNSD

Parental  CIPLDLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS
          ..P..LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD.SG.TTALRPS
Retrocopy GYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDMSGSTTALRPS

Parental  ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDP
          AST..LSSSVSSSKLFSSST.PHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDP
Retrocopy AST--LSSSVSSSKLFSSSTVPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDP

Parental  NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT
          N.YFIVGTAMVYPEEAEPKQG.IVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT
Retrocopy NMYFIVGTAMVYPEEAEPKQGCIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT

Parental  EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNF
          EKELR.ECNHYNNIMALYLKTKG.FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNF
Retrocopy EKELRMECNHYNNIMALYLKTKGNFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNF

Parental  LGAENAFNLFVCQKD
          LGAENAFNLFVCQKD
Retrocopy LGAENAFNLFVCQKD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_191 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_191 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000014200	1 retrocopy	retro_mputfur_191 ,