RetrogeneDB ID: | retro_mputfur_201 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896898.1:23682971..23683897(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMPUG00000013526 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SORD | ||
Ensembl ID: | ENSMPUG00000010850 | ||
Aliases: | None | ||
Description: | sorbitol dehydrogenase [Source:HGNC Symbol;Acc:11184] |
Percent Identity: | 77.74 % |
Parental protein coverage: | 86.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAAKAENLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFIVEKPMVLGHE |
M..AK.E.LSLVVH.PGDL.L.NYPIPEPGPNE.LLK.HSVGICGSDVHYWQHGRIG.FIVEKP.VL.HE | |
Retrocopy | MEVAKPEKLSLVVHRPGDLSLDNYPIPEPGPNELLLKTHSVGICGSDVHYWQHGRIGHFIVEKPVVLEHE |
Parental | ASGTVVKVGSLVKHLKPGDRVAIEPGALREMDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNADFCY |
ASGTV.KVGSL.KHLKP.DRVA.EP..LREMDE.CKI.RYNLSPSIFF.ATPPDD.NL..FYKHNADFCY | |
Retrocopy | ASGTVIKVGSLFKHLKPEDRVATEPSSLREMDELCKISRYNLSPSIFFYATPPDDRNLYWFYKHNADFCY |
Parental | KLPDNVTFEEGALIEPLSVGIHACRRAGITLGNKVFVCGAGP-IGLVTVIVAKAMGAAQVLVTDLSASRL |
KLPDNVTFEEG.LIEPLS.GIHACR.AGITL.N.VFVCGAGP..GL...I.AKAM.AAQVLVT.LSAS.L | |
Retrocopy | KLPDNVTFEEGVLIEPLSEGIHACRQAGITLRNRVFVCGAGP<MGLFILIMAKAMAAAQVLVTHLSASQL |
Parental | SKAKEVGADNVLQISKESPKEIASKVESLLGCKPEVTIECTGAEPAIQSGIYATRSGGTLVLVGLGPEMT |
SKA.EVG.D.VLQISK.SPKEI.SKV..LLGCK..VTI...GA.P.I.S.I.A..S.GTLVLV.LG.EM. | |
Retrocopy | SKAREVGPDIVLQISKDSPKEIVSKVKDLLGCKRKVTIMFPGAGPTIHSSIDASHSDGTLVLVALGSEMS |
Parental | TVPLVHAAIREVDIKGVFRYCNTWPMAISM |
.VP.VHAAI.E.DIK..F.YCNTWPMAI.M | |
Retrocopy | PVPPVHAAIQEMDIKVMFQYCNTWPMAILM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000025496 | 1 retrocopy | |
Ciona intestinalis | ENSCING00000021861 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010850 | 1 retrocopy |
retro_mputfur_201 ,
|
Mus musculus | ENSMUSG00000027227 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017291 | 7 retrocopies |