RetrogeneDB ID: retro_mputfur_204

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896898.1:37576891..37577582(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARRB2
• Ensembl ID: ENSMPUG00000010797
• Aliases: None
• Description: arrestin, beta 2 [Source:HGNC Symbol;Acc:712]

Sequence

>retro_mputfur_204
ATATCCCAGAATCTGCCCTGGTTCATCATACTGCAGCCAGGCCCAGAGGACACAGGGAAGGCCTGTACAGCAGACTCTGA
GATTTGAGCCTTCTCTGCCAAATTGTTAGAAGAGAAAAAACACCAAAGAAGGTCCATACATCTGGTGATCTGAAAGGTGC
AACTTGCCCCAGAGAAACTAGGCCCCAGCCTTCAGTAGAAACCACCCACCACATCATATCTGACCAGCCCTGCACCTTGA
GACTTCCATGGACAAGGCTCTGAACGATCATGGGGAGCCTCTACGTGTCAATGTCCATGTCACCAACATCTCCATCCAGA
CCATCAAGGAAATCAAAGTCTCTCTGAGATAACATGTGACATCTGCCTCTTCTGCTACCCAGGATAAGTGTCCTGTGACT
CATATCGAACAAAATGACCAGGTATCACCCAGCTCCCTGTTCTGAAGGTGTATACCATCACCCCGCGGCTGAGTGACAAC
TGGAAGAAGCATGGTCTTGTCCTGGAAGAGTATCTCAAGCATGAGAACACCAACCTGGCTTCCAGCACCATTGTGTAGGA
GGCTGCCAACAAGGAGGTGCTGGAATCCTGATGTCCTACAGGGTCAAGGTGAGCTGGTGGTGTCACATGGTGGGGTAGCC
TCTGTGGAGCTGCCTTTTGTTTTTATACACCGCAAACTCCACCACCACATC

Alignment

ORF - retro_mputfur_204 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.11 %
• Parental protein coverage: 57.21 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  IPQNLPCSVTLQPGPEDTGKACGVDFEIRAFCAKSLEEKSHKRNSVRLVIRKVQFAPEKPGP-QPSAETT
          I.QNLP....LQPGPEDTGKAC..D.EI.AF.AK.LEEK.H.R.S..LVI.KVQ.APEK.GP.QPS.ETT
Retrocopy ISQNLPWFIILQPGPEDTGKACTADSEI*AFSAKLLEEKKHQRRSIHLVI*KVQLAPEKLGP<QPSVETT

Parental  RHFLMSDR-SLHLEASLDKELYYHGEPLNVNVHVTNNSTKTIKKIKVSVRQYADICLFSTAQYKCPVAQI
          .H...SD...LHLE.S.DK.L..HGEPL.VNVHVTN.S..TIK.IKVS.R.........T.Q.KCPV..I
Retrocopy HH-IISDQ<ALHLETSMDKALNDHGEPLRVNVHVTNISIQTIKEIKVSLR*HVTSASSAT-QDKCPVTHI

Parental  EQDDQVSPSSTF-CKVYTVTPLLSDNREKRGLALDGKLKHEDTNLASSTIVKEGATKEVL-GILVSYRVK
          EQ.DQVSPSS.F..KVYT.TP.LSDN..K.GL.L...LKHE.TNLASSTIV.E.A.KEVL.GIL.SYRVK
Retrocopy EQNDQVSPSSLF<LKVYTITPRLSDNWKKHGLVLEEYLKHENTNLASSTIV*EAANKEVL<GILMSYRVK

Parental  V-KLVVSRGGDVSVELPFVLMHPKPHDHI
          V..LVVS.GG..SVELPFV..H.K.H.HI
Retrocopy V<ELVVSHGGVASVELPFVFIHRKLHHHI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_204 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_204 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016134	1 retrocopy	retro_amel_1127,
Canis familiaris	ENSCAFG00000015905	1 retrocopy	retro_cfam_1670,
Mustela putorius furo	ENSMPUG00000010797	1 retrocopy	retro_mputfur_204 ,