RetrogeneDB ID: retro_mputfur_329

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896903.1:14917331..14917896(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EGFL7
• Ensembl ID: ENSMPUG00000011294
• Aliases: None
• Description: EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:20594]

Sequence

>retro_mputfur_329
CCCCGCTCTGCTTGGTGGCCTGGCTGGAAGAGGACCAGCAGGTTCCCCAGGGCTGGTGGAGTAGCAATATGCCAGCCACC
CTCCCGGGATGGAGGAAGCTATGTCCAGCCAGGCCTCTGTCGCCACTCTGCAGGATGGCAGGGCGACATCTGCCAGACAG
ACATGGACAAATGCAGTGCTGGAGGGGGCACCTGTACCCTGCACTGTGTCAGCACCATGGCTAGTTACCGGTGCCAGAAA
GGGCAAAGCCCATCTGCAGATGGTGTGCTCTGCCTGCCCAAGTCAAGGACTCCCAGGGAAGCTCCGAACCCTACGACAGG
AATGGACAGTGCAGTAGAGGAAGAGGTGCGGATGCTTCAGTCCAGAATGGATGTGCTGGAGGAGAAGGGGCAGCTGGTGC
TGCCCCACTGCACAGCCAGGCCTCAAGGGCCCGGGAGCACAGGCTGCCTGACCCCAGCAGACTCCCCAGTTACTCCTTCC
AGCAGCTGGACCGCATCGGCTCTCTGCGAGAGCGATCTCCTTCCTGGAGGAGCAGCTGGGCTTCTGTTCCTGCAAGAAGG
AGCTG

Alignment

ORF - retro_mputfur_329 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.36 %
• Parental protein coverage: 68.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PRYACCPGWKRTSGLPRACGAAICRPPCQNGGTCVQPGRCHCPAGWRGDTCQIDVDECRAGQGTCPQHCV
          PR.A..PGWKRTS..PRA.G.AIC.PP...GG..VQPG.C...AGW.GD.CQ.D.D.C.AG.GTC..HCV
Retrocopy PRSAWWPGWKRTSRFPRAGGVAICQPPSRDGGSYVQPGLCRHSAGWQGDICQTDMDKCSAGGGTCTLHCV

Parental  NTAGSYWCQCREGHGRSADGALCLPETGTPRVAPNPTTGVDSAVEEEVQKLRSRVDVLEQKLQLVL-APL
          .T..SY...C..G...SADG.LCLP...TPR.APNPTTG.DSAVEEEV..L.SR.DVLE.K.QLVL.APL
Retrocopy STMASY--RCQKGQSPSADGVLCLPKSRTPREAPNPTTGMDSAVEEEVRMLQSRMDVLEEKGQLVL<APL

Parental  HSLASRALEHGLPDPSSLLAHSFQQLDRIDSLSEQ-ISFLEEQLGSCSCKEEL
          HS.ASRA.EH.LPDPS.L...SFQQLDRI.SL.E..ISFLEEQLG.CSCK.EL
Retrocopy HSQASRAREHRLPDPSRLPSYSFQQLDRIGSLRER<ISFLEEQLGFCSCKKEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_329 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_329 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003952	1 retrocopy	retro_amel_1056,
Canis familiaris	ENSCAFG00000019575	1 retrocopy	retro_cfam_945,
Mustela putorius furo	ENSMPUG00000011294	1 retrocopy	retro_mputfur_329 ,
Mus musculus	ENSMUSG00000026921	1 retrocopy	retro_mmus_1736,
Rattus norvegicus	ENSRNOG00000019388	1 retrocopy	retro_rnor_1362,