RetrogeneDB ID: | retro_mputfur_469 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896911.1:3769572..3769887(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEB2 | ||
Ensembl ID: | ENSMPUG00000015265 | ||
Aliases: | None | ||
Description: | transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) [Source:HGNC Symbol;Acc:11619] |
Percent Identity: | 55.05 % |
Parental protein coverage: | 89.83 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | HKTTIFTDAKESSTVFELKRIVEGILKRP-PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA |
HKTTI.T.AKE.STV.E.K..VEG.LK....D.Q.LYKD.QLLD.G..L..CGFTS.T..PQ.PATV.L. | |
Retrocopy | HKTTIITEAKEWSTVLEPKHVVEGMLKCA<QDTQTLYKDHQLLDGGTALEQCGFTSETGWPQDPATVKLP |
Parental | FR-ADEAFEALRIEPFSSPPELP-DVMKPQDSGSSANEQ |
F...D....AL..EP....P.LP...M.P.D.GS...EQ | |
Retrocopy | FQ<GD*T*QALCLEPYPN*PVLP<RAMTP*D*GSRVEEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019543 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000015347 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000021024 | 1 retrocopy | |
Felis catus | ENSFCAG00000004711 | 2 retrocopies | |
Homo sapiens | ENSG00000103363 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015306 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016536 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000015265 | 1 retrocopy |
retro_mputfur_469 ,
|
Mus musculus | ENSMUSG00000055839 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009471 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010116 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007013 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007663 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004814 | 6 retrocopies |