RetrogeneDB ID: | retro_mputfur_5 | ||
Retrocopy location | Organism: | Ferret (Mustela putorius furo) | |
| Coordinates: | GL897020.1:860431..861148(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMPUG00000020126 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSMPUG00000010164 | ||
| Aliases: | None | ||
| Description: | Phosphatidylinositol glycan anchor biosynthesis, class L [Source:UniProtKB/TrEMBL;Acc:G9KGI3] |
Retrocopy-Parental alignment summary:
>retro_mputfur_5
GCAGGGGGCTTCCTCTGGGTTTGGGACTCCTGGGAAAGAATGAGAAGTCAGGAGCCGGCTGGCGTCCCGGGAGATGGAAG
TAAGACCCTCCTGGTGATCGCGCACCCCGATGATGAAGCCATGTTCTTTGCTCCCACTTTGCTAGGCTTGGCCCGCCTGA
GGCACCGGCTGTCTTTGCTCTGCTTCTCTGCAGGAAATTACTACAATCAAGGGGAGATGCGTAAGAAAGAACTTTTGCAG
AGCTGTGATGTTTTGGGGATTCCACGTTCCAGTATAATGATTATTGACAACAGGGACTTCCCAGATGACCCAGGTGTGCA
GTGGGACACAGAGCGTGTGGCTGGCACCCTCCTCCAGCACGTGGAAGCAAATGGCATCAACCTGGTGGTGACGTTCGATG
CAGGGGGAGTCAGTGGTCACCGAAATCATGTTGCTCTGTATGCAGCTGTGAGGACCCTCCACTCAGAAGGGAAGTTACCT
AAAGGGTGCTCGGTGCTCACACTTCAGTCAGTGAATGTGTTGTGCAAGTACATCTCCCTTCTGGACCTGCCCTTTTCTCT
GCTTCATACCCGGGATGTCCTCTTCGTGCTCACCAGCAAAGAAGTGGCACAGGCCAAGAGAGCCATGTCCTGCCACCGCA
GCCAGCTGCTCTGGTTCCACCGCCTCTACTTACTCTTCTCCAGATACATGAGGATCAACTCCCTGCACTTCCTCTGA
ORF - retro_mputfur_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 98.74 % |
| Parental protein coverage: | 94.44 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | AWGFLWVWDSWERMRSQEPAGVPGDGSKTLLVIAHPDDEAMFFAPTLLGLARLRHRLSLLCFSAGNYYNQ |
| A.GFLWVWDSWERMRSQEPAGVPGDGSKTLLVIAHPDDEAMFFAPTLLGLARLRHRLSLLCFSAGNYYNQ | |
| Retrocopy | AGGFLWVWDSWERMRSQEPAGVPGDGSKTLLVIAHPDDEAMFFAPTLLGLARLRHRLSLLCFSAGNYYNQ |
| Parental | GEMRKKELLQSCDVLGIPRSSIMIIDNRDFPDDPGVQWDTERVAGTLLQHVEANGINLVVTFDAGGVSGH |
| GEMRKKELLQSCDVLGIPRSSIMIIDNRDFPDDPGVQWDTERVAGTLLQHVEANGINLVVTFDAGGVSGH | |
| Retrocopy | GEMRKKELLQSCDVLGIPRSSIMIIDNRDFPDDPGVQWDTERVAGTLLQHVEANGINLVVTFDAGGVSGH |
| Parental | RNHVALYAAVRTLHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPFSLLHTRDVLFVLTSKEVAQAKRAMS |
| RNHVALYAAVRTLHSEGKLPKGCSVLTLQSVNVL.KYISLLDLPFSLLHTRDVLFVLTSKEVAQAKRAMS | |
| Retrocopy | RNHVALYAAVRTLHSEGKLPKGCSVLTLQSVNVLCKYISLLDLPFSLLHTRDVLFVLTSKEVAQAKRAMS |
| Parental | CHRSQLLWFRRLYLLFSRYMRINSLHFL |
| CHRSQLLWF.RLYLLFSRYMRINSLHFL | |
| Retrocopy | CHRSQLLWFHRLYLLFSRYMRINSLHFL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_5 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_5 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mustela putorius furo | ENSMPUG00000010164 | 1 retrocopy |
retro_mputfur_5 ,
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