RetrogeneDB ID: retro_mputfur_554

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896919.1:8293194..8293530(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CHURC1
• Ensembl ID: ENSMPUG00000006792
• Aliases: None
• Description: churchill domain containing 1 [Source:HGNC Symbol;Acc:20099]

Sequence

>retro_mputfur_554
ATGTGTGGGGGCTGTGTGGAGAAGGAGTATCCGAATCGGGGTAACATCTGCCTGGAAAATGGATCTTTCTTGCTGAACTT
TACAGGCTGTGCAGTGTGTAGTAAGCGGGATTTTATGCTGATCACCAACAAATCTTTGAAAGAGGAAGATGGAGAAGAAA
TAGTTACCTATGATCATCTGTGTAAGAATTGTCATCATGTAATAGCCAGGCACGAGTACACAATCAGTATCATGGATGAA
TTTCAGGAGTATACCATGCTCTGTCTGTTATGTGGCAAAGCTGAAGATACTATCAGTATTCTCCCCAGTGACCCTCGACA
AATGACTCTGTTATTC

Alignment

ORF - retro_mputfur_554 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.21 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MCGGCVEKEYPNRGNICLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIAR
          MCGGCVEKEYPNRGNICLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIAR
Retrocopy MCGGCVEKEYPNRGNICLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIAR

Parental  HEYTFSIMDEFQEYTMLCLLCGKAEDTISILPDDPRQMTLLF
          HEYT.SIMDEFQEYTMLCLLCGKAEDTISILP.DPRQMTLLF
Retrocopy HEYTISIMDEFQEYTMLCLLCGKAEDTISILPSDPRQMTLLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_554 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_554 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004300	1 retrocopy	retro_mluc_2068,
Monodelphis domestica	ENSMODG00000009664	1 retrocopy	retro_mdom_1775,
Mustela putorius furo	ENSMPUG00000006792	1 retrocopy	retro_mputfur_554 ,
Oryctolagus cuniculus	ENSOCUG00000001838	1 retrocopy	retro_ocun_997,
Pteropus vampyrus	ENSPVAG00000011384	1 retrocopy	retro_pvam_406,