RetrogeneDB ID: retro_mputfur_59

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897205.1:870720..871356(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000020071
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000001297
• Aliases: None
• Description: None

Sequence

>retro_mputfur_59
ATGACGACGGAGACCTTCGTGAAGGATATCAAGCCCGGGCTCAAGAATCTGAACCTCATCTTCCTTGTGCTGGAGACAGG
TCGAGTGACCAAGACAAAGGACGGGCACGAGGTTCGGACCTGCAAAGTGGCAGACAAAACAGGCAGCATCAATATCTCTG
TCTGGGACGACGTGGGTAACCTGATCCAGCCTGGAGACATTATTCGGCTCACCGAAGGGTATGCTTTAGTGTTCAAAGGT
TGTCAGACACTATACACTGGACGTGGGGGTGATCTTCAGAAGATTGGAGAATTCTGTATGGTATATTCTGAGGTTCCTAA
CTTCAGTGAGCCAAACCCAGAGTACAGCGCCCAGCAGGCACCCAACAAGGTGGTGCAGAACGATAGCAGCCCTCCGGCCC
CCCAGCCTACCACCGGACCCCCTGCTGTTTCTCCAGCCTCCGAGAACCAGAACGGGAATGGACTGAGTGCCCCACCAGGT
CCTGGTGGTGGCCCGCACCCCCCTCACACACCCTCGCATCCCCCCAGCACCCGAATTCCCCGAAGCCAGCCCAACCACAC
ACCTGCCGGCCCTCCTGGCCCCTCCAGCAGCCCTGTCAGTAACGGCAAAGAAACCCGGAGGAGCAGCAAGAGATAG

Alignment

ORF - retro_mputfur_59 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.63 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRL
          MTTETFVKDIKPGLKNLNLIF.VLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRL
Retrocopy MTTETFVKDIKPGLKNLNLIFLVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRL

Parental  TKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSAQQAPNKVVQNDSSPPAPQPTTGP
          T.GYA.VFKGC.TLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSAQQAPNKVVQNDSSPPAPQPTTGP
Retrocopy TEGYALVFKGCQTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSAQQAPNKVVQNDSSPPAPQPTTGP

Parental  PAVSPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSSSPVSNGKETRRSSK
          PAVSPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRI.RSQPNHTPAGPPGPSSSPVSNGKETRRSSK
Retrocopy PAVSPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRIPRSQPNHTPAGPPGPSSSPVSNGKETRRSSK

Parental  R
          R
Retrocopy R

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_59 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_59 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002798	1 retrocopy	retro_btau_545,
Callithrix jacchus	ENSCJAG00000011455	1 retrocopy	retro_cjac_1961,
Dasypus novemcinctus	ENSDNOG00000013517	1 retrocopy	retro_dnov_1189,
Erinaceus europaeus	ENSEEUG00000001325	1 retrocopy	retro_eeur_1,
Gorilla gorilla	ENSGGOG00000009050	1 retrocopy	retro_ggor_2094,
Macropus eugenii	ENSMEUG00000004485	4 retrocopies	retro_meug_1118, retro_meug_123, retro_meug_1835, retro_meug_540,
Mustela putorius furo	ENSMPUG00000001297	1 retrocopy	retro_mputfur_59 ,
Sarcophilus harrisii	ENSSHAG00000002240	1 retrocopy	retro_shar_493,