RetrogeneDB ID: retro_mputfur_67

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896912.1:19541638..19542391(+)
• Located in intron of: ENSMPUG00000004993

Retrocopy information

• Ensembl ID: ENSMPUG00000018902
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000006663
• Aliases: None
• Description: NFU1 iron-sulfur cluster scaffold-like protein [Source:UniProtKB/TrEMBL;Acc:G9KD99]

Sequence

>retro_mputfur_67
CCTTTAAAGAAGAGATTAAGTTGGGCGGTTGCTGCTGCGGGGCTGCGTAGGCGATTCTGTCCTATGATGAATCCATACAC
CATTAAGAAACAGCTTCTGCATCAGTTTGTACATAAACCACTTTTCCCACTGCCTGCAACCTTATGTAACACAGTGAGAC
ACATGTTTATTCAAACACAAGATACTCCAAATCCCAACAGTTTAAAGTTTATCCCAGGAAAACCAGTTCTTGAGACAAGG
ACCATGGATTTTCCCACACAAGCTGCAGCATTTCGCTCCCCTCTGGCTAGGCAGTTATTTAGAATTGAAGGAGTAAAAAG
TGTCTTTTTTGGACCAGATTTCATCACTGTCACAAAGGAAAGTGAAGAGTTAGACTGGAATTTACTGAAACCAGATATTT
ATGCAACAATCATGGATTTCTTTGCTTCTGGCTTACCCTTAGTTACTGAGGAAACATCTTCAGGAGAAGCAGGATCTGAA
GAAGATGATGAAGTTGTGGCAATGATTAAGGAATTGTTAGATACTAGAATACGGCCAACTGTGCAGGAAGACGGAGGAGA
TGTGATCTATAAAGGCTTTGAAGATGGCATCGTACACCTCAAACTCCAAGGTTCTTGTACCAGCTGCCCCAGTTCAATCA
TTACTCTTAAAAATGGAATTCAGAACATGCTGCAGTTTTATATTCCGGAAGTAGAGGGTGTAGAACAGGTTATGGATGAT
GAATCAGATGAAAAAGAAGCTAACTCACCTTAA

Alignment

ORF - retro_mputfur_67 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.98 %
• Parental protein coverage: 98.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RLRWGAAVAAAGLRRRFCPMMNPYTIKKQLLHQFVHKPLFPLPATLCNTVRHMFIQTQDTPNPNSLKFIP
          RL.W..AVAAAGLRRRFCPMMNPYTIKKQLLHQFVHKPLFPLPATLCNTVRHMFIQTQDTPNPNSLKFIP
Retrocopy RLSW--AVAAAGLRRRFCPMMNPYTIKKQLLHQFVHKPLFPLPATLCNTVRHMFIQTQDTPNPNSLKFIP

Parental  GKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKESEELDWNLLKPDIYATIMDFFA
          GKPVLETRTMDFPT.AAAFRSPLARQLFRIEGVKSVFFGPDFITVTKESEELDWNLLKPDIYATIMDFFA
Retrocopy GKPVLETRTMDFPTQAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKESEELDWNLLKPDIYATIMDFFA

Parental  SGLPLVTEETSSGEAGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSS
          SGLPLVTEETSSGEAGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIV.LKLQGSCTSCPSS
Retrocopy SGLPLVTEETSSGEAGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVHLKLQGSCTSCPSS

Parental  IITLKNGIQNMLQFYIPEVEGVEQVMDDESDEKEANSP
          IITLKNGIQNMLQFYIPEVEGVEQVMDDESDEKEANSP
Retrocopy IITLKNGIQNMLQFYIPEVEGVEQVMDDESDEKEANSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_67 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_67 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000005978	1 retrocopy	retro_chof_456,
Callithrix jacchus	ENSCJAG00000019156	1 retrocopy	retro_cjac_1573,
Echinops telfairi	ENSETEG00000019002	1 retrocopy	retro_etel_1371,
Homo sapiens	ENSG00000169599	1 retrocopy	retro_hsap_2638,
Macaca mulatta	ENSMMUG00000000435	1 retrocopy	retro_mmul_1524,
Monodelphis domestica	ENSMODG00000011805	1 retrocopy	retro_mdom_1395,
Mustela putorius furo	ENSMPUG00000006663	1 retrocopy	retro_mputfur_67 ,
Mus musculus	ENSMUSG00000029993	1 retrocopy	retro_mmus_1401,
Nomascus leucogenys	ENSNLEG00000010101	1 retrocopy	retro_nleu_646,
Ochotona princeps	ENSOPRG00000016760	2 retrocopies	retro_opri_380, retro_opri_48,
Pongo abelii	ENSPPYG00000012339	1 retrocopy	retro_pabe_2329,
Pan troglodytes	ENSPTRG00000012016	1 retrocopy	retro_ptro_1778,
Tupaia belangeri	ENSTBEG00000008616	1 retrocopy	retro_tbel_525,
Tarsius syrichta	ENSTSYG00000013765	1 retrocopy	retro_tsyr_108,