RetrogeneDB ID: retro_mputfur_756

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:4584133..4585249(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000012637
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UMPS
• Ensembl ID: ENSMPUG00000004294
• Aliases: None
• Description: uridine monophosphate synthetase [Source:HGNC Symbol;Acc:12563]

Sequence

>retro_mputfur_756
GAACAGGCCCGGGAGCTCGTGGAGATGGCAGCCGCGGAAGCAGCTTTGGGGTCGTTGATCACGGGTCTGTACGACGTGCA
GGCTTTCAAGTTTGGGAACTTCGTACTGAAGAGCAGGCTCTCTTCCCCTGTGTACATCGATCTGCGTGGCATCGTGTCTC
GACCGCGTCTTCTGAGTCAGGTTGCTGATATTTTATTTCAAACTGCCCAAAATGCAGGAATCAATTTTGACACCGTGTGT
GGAGTACCTTATACAGCTTTACCATTGGCTACAGTTATCTGTTCAACCAACCAAATTCCAATGCTTATTAGAAGGAAAGA
AACAAAGGATTATGGTACTAAATGTCTTGTAGAAGGAGCTGTTAATCCAGGAGAAACCTGTTTGATCATTGAAGATGTCA
TTACCAGTGGATCTAGTGTTTTGGAAACTGTTGAGGTTCTTCAGAAGGAGGGCTTAAAGGTCACTGATGCCATAGTGCTG
CTGGACAGAGAGCAAGGAGGCAGAGACAAGTTGCAGGCGCATGGGATCCATCTCCACTCAGTGTGTACATTGTCCAAAAT
GCTGGAGATTCTTGAGCAACAGAAAAAAATTGATGCAGAGATGGTTGAGAGAGTGAAGAGATTTATTCAGGAGAAGGTTT
TTGTGGCAGCTAATCACAATGATTCACTCCTTCCTATAAACAAAGCTCCTGGAGAACTCAGCTTTGGTGCACGTGCAGAG
CTGCCTAGGATTCACCCAGTTGCGGCGAAGCTTCTCCGGCTTATGCAGAAGAAAGAGACCAATCTCTGTCTGTCTGCTGA
TATTTCCGAGTCCAGAGAGCTGTTGCAGCTAGCAGATGCTTTAGGACCCCGCATCTGCATACTCAAGACTCATGTGGATA
TTCTGAATGATTTTACTCTAGATGTGATGAAGGAGTTAACGGCTCTGGCAAAACGCCATAAGTTCTTAATATTTGAAGAC
CGGAAATTTGCAGATATAGGAAACACAGTAAAAAAACAGTATGAAGGTGGTGTCTTTAAAATAGCTTCTTGGGCAGATCT
GGTCAATGCTCATGTGGTGCCAGGCTCGGGGGTTGTGTGGCCTGCCTTTGCAGTGGGGATGCCTGCTCATTGCGGA

Alignment

ORF - retro_mputfur_756 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.37 %
• Parental protein coverage: 83.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EQARERVEMAAAEAALGSLVTGLYDVQAFKFGNFVLKSGLSSPVYIDLRGIVSRPRLLSQVADILFQTAQ
          EQARE.VEMAAAEAALGSL.TGLYDVQAFKFGNFVLKS.LSSPVYIDLRGIVSRPRLLSQVADILFQTAQ
Retrocopy EQARELVEMAAAEAALGSLITGLYDVQAFKFGNFVLKSRLSSPVYIDLRGIVSRPRLLSQVADILFQTAQ

Parental  NAGINFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGAVNPGETCLIIEDVVTSGSSV
          NAGINFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTK.LVEGAVNPGETCLIIEDV.TSGSSV
Retrocopy NAGINFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKCLVEGAVNPGETCLIIEDVITSGSSV

Parental  LETVEVLQKEGLKVTDAIVLLDREQGGRDKLQAHGIHLHSVCTLSKMLEILEQQKKIDAEMVERVKRFIQ
          LETVEVLQKEGLKVTDAIVLLDREQGGRDKLQAHGIHLHSVCTLSKMLEILEQQKKIDAEMVERVKRFIQ
Retrocopy LETVEVLQKEGLKVTDAIVLLDREQGGRDKLQAHGIHLHSVCTLSKMLEILEQQKKIDAEMVERVKRFIQ

Parental  ENVFVAANPNDSLIPINKAPGELSFGARAELPRIHPVAAKLLRLMQKKETNLCLSADILESRELLQLADA
          E.VFVAAN.NDSL.PINKAPGELSFGARAELPRIHPVAAKLLRLMQKKETNLCLSADI.ESRELLQLADA
Retrocopy EKVFVAANHNDSLLPINKAPGELSFGARAELPRIHPVAAKLLRLMQKKETNLCLSADISESRELLQLADA

Parental  LGPRICILKTHVDILNDFTLDVMKELTALAKRHEFLVFEDRKFADIGNTVKKQYEGSGVFKIASWADLVN
          LGPRICILKTHVDILNDFTLDVMKELTALAKRH.FL.FEDRKFADIGNTVKKQYEG.GVFKIASWADLVN
Retrocopy LGPRICILKTHVDILNDFTLDVMKELTALAKRHKFLIFEDRKFADIGNTVKKQYEG-GVFKIASWADLVN

Parental  AHVVPGSGVVRGLSEVGLPLQRG
          AHVVPGSGVV.....VG.P...G
Retrocopy AHVVPGSGVVWPAFAVGMPAHCG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_756 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_756 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000004294	1 retrocopy	retro_mputfur_756 ,
Otolemur garnettii	ENSOGAG00000005426	1 retrocopy	retro_ogar_373,