RetrogeneDB ID: retro_mputfur_766

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:8601460..8601783(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DRAP1
• Ensembl ID: ENSMPUG00000011429
• Aliases: None
• Description: DR1-associated protein 1 (negative cofactor 2 alpha) [Source:HGNC Symbol;Acc:3019]

Sequence

>retro_mputfur_766
CAGCAGCCTGACTTCTTGAAGGACCTGGTGGCCTCTGTGCCTGAGATGCAGGATGACAGGGAAGATAACACCATGGAAAG
GGAGAGGGGCCAGAAGCCAGGCAACAATGGCTGGAGGAATAGGAGGATAGGAAGCAAAGGCAAGGACAAGAAGCTGTCAG
GGATGGACTTGGAGCAGGAGGGTGGGTCTGAGGACATAGATGCGGACAGGGAAGATGAGACACCAGGGGCTCCACCTCAG
TCCAGCCACCCCCTGCCCACTTTTAGAGTCCCCTCATGCCCTTCACTTTGACTTTGCCTTTGTTGCTAGCACCTTCTCTC
CCC

Alignment

ORF - retro_mputfur_766 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.21 %
• Parental protein coverage: 62.16 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QQFDFLKDLVASVPDMQGDGEDNHMDGDKGTRRGRKPGSGGRKNGGMGSKSKDKKLSGTDSEQEDDSDDT
          QQ.DFLKDLVASVP.MQ.D.EDN.M.......RG.KPG..G..N...GSK.KDKKLSG.D.EQE..S.D.
Retrocopy QQPDFLKDLVASVPEMQDDREDNTMERE----RGQKPGNNGWRNRRIGSKGKDKKLSGMDLEQEGGSEDI

Parental  DTDGEEETSQAPAQASH-PPAHFQSPPTPFMPFTSTLPLPPAPPGP
          D.D.E.ET..AP.Q.SH.PPAHF.SP....MPFT.TLPL..AP..P
Retrocopy DADREDETPGAPPQSSH<PPAHF*SP---LMPFTLTLPLLLAPSLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_766 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_766 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017278	1 retrocopy	retro_amel_1762,
Mustela putorius furo	ENSMPUG00000011429	1 retrocopy	retro_mputfur_766 ,
Sarcophilus harrisii	ENSSHAG00000000960	1 retrocopy	retro_shar_792,