RetrogeneDB ID: retro_mputfur_793

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896948.1:5940900..5941225(+)
• Located in intron of: ENSMPUG00000011448

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TSPAN2
• Ensembl ID: ENSMPUG00000001674
• Aliases: None
• Description: tetraspanin 2 [Source:HGNC Symbol;Acc:20659]

Sequence

>retro_mputfur_793
ATAGGCAAGGGTGTAGCTATATGATAGGCTCGGACCATATATAAAGAGGCTTATTATAACTATTACCCTACAGATAGGGA
AAAGGGAAACAGGACTCTCGTACTTTCCACTCAACATTTTAGTGTTGTGAAACAAAAGGTCTGAACAGGTCCAATCCATA
TGCCTAAAGAAGCTTCTCAGACACAGACATTGTATTAGTAAAATTGAGACCATAATCAGCGTTAAACTGGAATCTGTTGG
TATTGGAATTGGTGGTCTCATGATCTTTGGCATGATGTTCAGCATGGTCCTTGGCTGTGCAATGTTAAACTCATGAGATG
TGATA

Alignment

ORF - retro_mputfur_793 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.0 %
• Parental protein coverage: 50.45 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  IGKGVAIRHVQTMYKEAY-NDYLKDRERGNGTLI-TFHSTFQCCGKES-SEDVQQTKEKGIPVHRNNCID
          IGKGVAI....T.YKEAY.N.Y..DRE.GN.TL..TFHSTF.CC.....SE.VQ....K....HR..CI.
Retrocopy IGKGVAI**ARTIYKEAYYNYYPTDREKGNRTLV<TFHSTF*CCETKG<SEQVQSICLKKLLRHRH-CIS

Parental  EIEAIISVKLQLIGIVGIGIAGLTIFGMIFSMVLCCAIRTSRDVI
          .IE.IISVKL.....VGIGI.GL.IFGM.FSMVL.CA...S.DVI
Retrocopy KIETIISVKLES---VGIGIGGLMIFGMMFSMVLGCAMLNS*DVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_793 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_793 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010910	1 retrocopy	retro_amel_1051,
Canis familiaris	ENSCAFG00000009732	1 retrocopy	retro_cfam_1227,
Felis catus	ENSFCAG00000029385	1 retrocopy	retro_fcat_1028,
Mustela putorius furo	ENSMPUG00000001674	1 retrocopy	retro_mputfur_793 ,