RetrogeneDB ID: retro_mputfur_865

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896962.1:2988282..2990160(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019277
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CCDC22
• Ensembl ID: ENSMPUG00000014046
• Aliases: None
• Description: coiled-coil domain containing 22 [Source:HGNC Symbol;Acc:28909]

Sequence

>retro_mputfur_865
ATGGAGGAGGCAGACCAAATCCTCATCCATTCCCTGCGCCAGGCGGGCACAGCAGTTCCTCCAGATGTGCAGACCCTGCG
AGCCTTTACCCCTGAGTTGGCTGTAGAAACTGTAGTCTGCTGCCTGCGTGTGATCGACCCTGCCATGGGCTCTGGCCTCA
GCCCCCTGCTGCCTCTGGCCATGTCCAACCGCTTCCGCCTGGCCGTGAGCCTGGCTCAGGCCTGCAAGGACCTGGGCTAT
TCCTTGGAGCTTGACTATCAGAACTTCCTCTATCCCAGTGAGCCTGATCTCCGGAAGCTGCTTTTCTTCTTGGCTGAGCG
TCTGCCCTCTGATGCCTCTGAGGATGCAGATCAGCCTGCTAGTGACTCAGCTATTCTTCTCCAGGCCATTGGGGGCCAAA
TCCGGGACCAGCTGGCCCTTCCCTGGGTCCCACCCCTCCTTCGTACTCCCAAGCTACAGCACCTCCAGGGTTCAGCCTTC
CAGAAGCCTTTCTACACCACCAGGCTGGTCATGCCTGAGTTGAGTTCCAGCGGGGAACTCTGGGAGTTCCAGGCGAGTCC
TCTGGTGCTACCAGCCCCCACCCAGGTGCCCCAGCCTGCAGGGAGGGTGGCCTCACTCCTCAAATGCCATGCCATCCAGC
TTTGCCAGCACATGGGTGGGAATCACCTTGGGGATGAGGATTGGGTCCACCGGGCAAGCTGCCATCACACCCAGGAAGAT
CCATGGGCTCAGAGGCAATGGCTACAGAAGTACCTGGCTGATCATCTCTGCCAGACCTGGGGCCGACTAGGGGCTCCCCC
ACAAACCGGAGACCTGGGAGAGCTGCTGCAGGCCTGGGGTGCTGGGGCCAGGACTGGTGCTTCCAAGGCCTCCAACTGCA
CACACTCAGAGAAGTTCACCTTTCATCTGGAGTCTGAGATACAGGCAGCCCAGGTGTCTGATGTGTCTGCCACCTCCCAG
TGGCCTGAACAGGACACGAAGGCAGCTCAAGAGCAGGAGCTGGAGTTTCTCCGGGAGCAGCTAGAGGGAGTGAACCACAG
CATTGAAGAGGTTGAAACCAACATGAAGACCCTGGAAATCAGCTTCATGCAGGTGGAAACCGAGCGTTACCAGAATGAGC
TCAGCACTGCGGAGTGTGAGCAGGCACTGCACTTGAAGAGCCGGGCAGTGGAGCTGCTGCCTGGCGGGGCTGCCAACCTT
GCCAAGCTGCAGCTCATGGTGGAGAGTACTGTCCAGCAGGTCTTCCACTTGGTGGGACAGTGGGAAAAGCACCGGGTCCC
GCTCCTGGCTGAGTACCGCCACCTCCGAAAGCTCCAGGATTACAGAGAGTTGGAATCTTCTCGACGGCTGGCAGAGATCC
AGGAGCTGCACCAGAGTGTTCGAGGAGCTGCCAGAGAGGCCCAAAGGAAGGAGGAAGTCTATAAGCAGCTGGTGTCAGAA
CTGGAGAACCTGCCTAGAGATGTGTCCCGGCTTGCCTATACCCAGAGCATCCTGGAGATGGTGGGCAACATCCGGAAGCA
GAAGGAAGAGATCACTAAGATTTTATCAGACACAAAGGAGCTTCAGAAGGAAATCAGCTCCCTGTCTGGGAAGCTGGATC
AGACATTTACAGTGACTGATGAGCTTGTGTTCAAGGATGCCAAGAAGGATGATGCCGTTCGGAAGGCATACAAGTATCTA
GCTGCCTTGCATGAGAACTGCAGCCAGCTCATCCAGACCGCTGAGGATGCAGGCACAATCATGTGGGAAGCTGGAGATCT
TGAAGAGCAGATAGAGACAGAGATGGGGAAGAAGACCCTCAGCAACCTGGAGAAGATCCGCGAGGACTACCAAGCCCTTT
GCCAGGAGAATGCTGGCCTTTTGGGGTGGATCCCAGAG

Alignment

ORF - retro_mputfur_865 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.55 %
• Parental protein coverage: 99.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLAMSARFRLAMS
          MEEAD.ILIHSLRQAGTAVPPDVQTLRAFT.EL.VE.VV.CLRVI.PA.GSGLSPLLPLAMS.RFRLA.S
Retrocopy MEEADQILIHSLRQAGTAVPPDVQTLRAFTPELAVETVVCCLRVIDPAMGSGLSPLLPLAMSNRFRLAVS

Parental  LAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPSDASEDADQPAGDSAILLRAIGSQIRDQLAL
          LAQAC.DLGY.LEL.YQNFLYPSEPDLR.LL.FLAERLPSDASEDADQPA.DSAILL.AIG.QIRDQLAL
Retrocopy LAQACKDLGYSLELDYQNFLYPSEPDLRKLLFFLAERLPSDASEDADQPASDSAILLQAIGGQIRDQLAL

Parental  PWVPPLLRTPKLQHLQGSASQKPFHTTRLVLPELSSRGEPREFQASPLLLPAPTQVPQPAGRVASLLESH
          PWVPPLLRTPKLQHLQGSA.QKPF.TTRLV.PELSS.GE..EFQASPL.LPAPTQVPQPAGRVASLL..H
Retrocopy PWVPPLLRTPKLQHLQGSAFQKPFYTTRLVMPELSSSGELWEFQASPLVLPAPTQVPQPAGRVASLLKCH

Parental  AIQLCRHTGRDRPGDEDWVHRAPRHPTQEDTRAQRQRLQKHLAEHLRQTWGRPGAPAQARDLGELLQAWG
          AIQLC.H.G....GDEDWVHRA..H.TQED..AQRQ.LQK.LA.HL.QTWGR.GAP.Q..DLGELLQAWG
Retrocopy AIQLCQHMGGNHLGDEDWVHRASCHHTQEDPWAQRQWLQKYLADHLCQTWGRLGAPPQTGDLGELLQAWG

Parental  VGARTGAPKGSRFTHSEKFTFHPEPEVQAAQVCDVPAPSQQPEQDTRAAQEQELESLREQLEGVNRNIEE
          .GARTGA.K.S..THSEKFTFH.E.E.QAAQV.DV.A.SQ.PEQDT.AAQEQELE.LREQLEGVN..IEE
Retrocopy AGARTGASKASNCTHSEKFTFHLESEIQAAQVSDVSATSQWPEQDTKAAQEQELEFLREQLEGVNHSIEE

Parental  VEGNMKTLGINLVQVEAERRQSELNVAEREQVLRLKSRAAELLPDGAANLAKLQLVVESSAQRVIHLAGQ
          VE.NMKTL.I...QVE.ER.Q.EL..AE.EQ.L.LKSRA.ELLP.GAANLAKLQL.VES..Q.V.HL.GQ
Retrocopy VETNMKTLEISFMQVETERYQNELSTAECEQALHLKSRAVELLPGGAANLAKLQLMVESTVQQVFHLVGQ

Parental  WEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKEEVYKQLVSELETLPRDVSR
          WEKHRVPLLAEYRHLRKLQD.RELESSRRLAEIQELHQSVR.AA.EA.RKEEVYKQLVSELE.LPRDVSR
Retrocopy WEKHRVPLLAEYRHLRKLQDYRELESSRRLAEIQELHQSVRGAAREAQRKEEVYKQLVSELENLPRDVSR

Parental  LAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYL
          LAYTQ.ILE.VGNIRKQKEEITKILSDTKELQKEI.SLSGKLD.TF.VTDELVFKDAKKDDAVRKAYKYL
Retrocopy LAYTQSILEMVGNIRKQKEEITKILSDTKELQKEISSLSGKLDQTFTVTDELVFKDAKKDDAVRKAYKYL

Parental  AALHENCSQLIQTIEDTGTIMREVRDLEEQIETEMGKKTLSNLEKIREDYRALRQENASLLGRVRE
          AALHENCSQLIQT.ED.GTIM.E..DLEEQIETEMGKKTLSNLEKIREDY.AL.QENA.LLG...E
Retrocopy AALHENCSQLIQTAEDAGTIMWEAGDLEEQIETEMGKKTLSNLEKIREDYQALCQENAGLLGWIPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_865 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_865 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012144	1 retrocopy	retro_amel_131,
Myotis lucifugus	ENSMLUG00000009356	2 retrocopies	retro_mluc_2141, retro_mluc_410,
Mustela putorius furo	ENSMPUG00000014046	1 retrocopy	retro_mputfur_865 ,