RetrogeneDB ID: retro_mputfur_886

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896965.1:9092165..9092536(+)
• Located in intron of: ENSMPUG00000003301

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL21D
• Ensembl ID: ENSMPUG00000004994
• Aliases: None
• Description: methyltransferase like 21D [Source:HGNC Symbol;Acc:20352]

Sequence

>retro_mputfur_886
GGGTTTTCTGGCGATGGGGCACACAGTCTGAGCCAGCAGTCAGGGCTGGAGCTGGGCTCCAGGACTGTGGCTGTGGGATT
CATGGTTGCTACTCTCGGGGCTGATGTTGTGGTCACATATCTGGAGGAATTGCAAGATTTGCTGAAGATAAATATTAATA
TGAACAAGCATCTTGTCACTAGTTCTGTTCAAGCCAAAGTTCTGAAATGGGGGGAAGAAACAGAAGACTTTCCTTCTCCG
TCAGACTTCATACTGATGGCCAACAGCATATACTATGAAAGTCTTTGGAGCCATTGTTGAAAACTCCAAAAGGTCTTAGT
GAATATGAGACTTGAATTATATGTTGTTATGAACAATGAACAAGGAGGAAA

Alignment

ORF - retro_mputfur_886 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.2 %
• Parental protein coverage: 54.39 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GFSGDGAHALSRRSVLELGSGTGAVGLMAATLGADVVVTDLEELQDLLKMNINMNKHLVTGSVQAKVLKW
          GFSGDGAH.LS..S.LELGS.T.AVG.M.ATLGADVVVT.LEELQDLLK.NINMNKHLVT.SVQAKVLKW
Retrocopy GFSGDGAHSLSQQSGLELGSRTVAVGFMVATLGADVVVTYLEELQDLLKININMNKHLVTSSVQAKVLKW

Parental  GEEIEDFPSPPDYILMADCIYYE-ESLEPLLKTLKDLSGFETCIICCYEQRTMGK
          GEE.EDFPSP.D.ILMA..IYYE..SLEPLLKT.K.LS..ET.IICCYEQ.T..K
Retrocopy GEETEDFPSPSDFILMANSIYYE<KSLEPLLKTPKGLSEYET*IICCYEQ*TRRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_886 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_886 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000013492	1 retrocopy	retro_dnov_1734,
Homo sapiens	ENSG00000100483	1 retrocopy	retro_hsap_365,
Mustela putorius furo	ENSMPUG00000004994	1 retrocopy	retro_mputfur_886 ,
Pongo abelii	ENSPPYG00000005798	1 retrocopy	retro_pabe_337,
Pan troglodytes	ENSPTRG00000006327	1 retrocopy	retro_ptro_286,