RetrogeneDB ID: | retro_mputfur_905 | ||
Retrocopy location | Organism: | Ferret (Mustela putorius furo) | |
| Coordinates: | GL896969.1:341862..342333(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | STX6 | ||
| Ensembl ID: | ENSMPUG00000011478 | ||
| Aliases: | None | ||
| Description: | syntaxin 6 [Source:HGNC Symbol;Acc:11441] |
Retrocopy-Parental alignment summary:
>retro_mputfur_905
ATGTCTATGGAGAACTCCTACTTTGTGAAAGGAGAAGTACAGAAAGCAGTCAACACCATCCAGGGACTATTCCAGAGATG
GACAGAGCTCCTCCAGGACCCCTCCATAGCAACGAGGGAAGAAATCCACTAGATCACTGATGAGCTGAGGAACAACCTCT
GGAGCATAGAATGGGATCTAGAGGACCTTGATGAGATCATAGCAGAGTTTAAGCAAATGCTAGAAAATTCAAACTCGATG
CAACTGAATGAAGTATAAGATAAACCTTCGTGCCAAGTACTTGGCAGATTGTCAGGGGCATGAAGGATCAGATGTCAGCT
TCATCTGTGCAGGCATTAGCTGAACCAACGACTAGACAGGTACGGCCAGTGGACAGTGGTGGCCAGAACTGGACTGCCGG
AATACAGAGAAATATACAGACACCTCGACCTCGGGCTCTAGTTGGCCAACTCCCATTCTATGATGGAGCAG
ORF - retro_mputfur_905 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.25 % |
| Parental protein coverage: | 61.96 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWDLEDLDETI-S |
| MSME...FV.KGEVQKAVNT.QGLFQRWTELLQDPS.ATREEI...T.ELRNNL.SIEWDLEDLDE.I.S | |
| Retrocopy | MSMENSYFV-KGEVQKAVNTIQGLFQRWTELLQDPSIATREEIH*ITDELRNNLWSIEWDLEDLDEII<S |
| Parental | IVEANPRKFNLDATELSIRKTFITSTRQVVRDMKDQMSASSVQALAERKNRQALLGDSGGQNWSTGT-TD |
| .V.AN.RKF.LDATE.SIR.TF..ST.Q.VR.MKDQMSASSVQALAE...RQ....DSGGQNW..G.... | |
| Retrocopy | RV*ANARKFKLDATE*SIR*TFVPSTWQIVRGMKDQMSASSVQALAEPTTRQVRPVDSGGQNWTAGI>RE |
| Parental | KYGRLDRELQLANSHFIEEQ |
| .Y..LD..L.LANSH...EQ | |
| Retrocopy | IYRHLDLGL*LANSHSMMEQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_905 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_905 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mustela putorius furo | ENSMPUG00000011478 | 1 retrocopy |
retro_mputfur_905 ,
|
| Oryctolagus cuniculus | ENSOCUG00000004714 | 1 retrocopy | |
| Pelodiscus sinensis | ENSPSIG00000009402 | 1 retrocopy |