RetrogeneDB ID: retro_nleu_117

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397329.1:9976937..9977951(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000018660
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CSNK1E
• Ensembl ID: ENSNLEG00000015080
• Aliases: None
• Description: None

Sequence

>retro_nleu_117
ATGGCAAACAACAGCGGCTCCAAGGCCGAACTCGTTGTGGGAGGGAAATACAAACTGGTGCGGAAGATCGGGTCTGGCTC
CTTTGGGGACGTTTATCTGGGCATCACCACCACCAATGGCGAGGAAGTAGCAGTGAAGCTGGAATCTCAGAAGGTCAAGC
ACCCCCAGTTGCTGTATGAGAGCAAACTCTACACGATTCTTCAAGGTGGCGTTGGCATCCCCCACATGCACTGGTATGGT
CAGGAAAAAGACAACAATGTGCTAGTCATAGACCTTCTGGGACCCAGCCTCGAGGACCTCTTTAATTTCTGTTCAAGAAG
GTTCACCATGAAAACTGTCCTTATGTTAGCCGACCAGATGATCAGCAGAATTGAATACGTGCATACAAACAATTTTCTAC
ACCGAGACATTAAACCAGATAACTTCCTGATGGGTACTGGGCGTCACTGTAATAAGTTGTTCCTTATTGATTTTGGTTTG
GCCAAAAAGTACAGAGACAACAGGACCAGGCAACATATACCGTACAGAGAAGACAAACACCTCATTGGCACTGTCCGATA
TGCCAGCATCAATGCACATCTTGGTATTGAGCAGAGCCGCCGAGATGACATGGAATCCTTAGGCTACGTTTTCATGTATT
TTAATAGAACCAGCCTGCCATGGCAAGGACTAAGGGCTATGACAAAAAAACAAAAATATGAAAAGATTAGTGAGAAGAAG
ATGTCCACCCCTGTTGAAGTTTTATGTAAGGGGTTTCCTGCAGAATTCGCCATGTACTTGAACTACTGTCGTGGGCTGCG
CTTTGAGGAAGTCCCAGATTACATGTATCTGAGGCAGCTATTCCGCATTCTTTTCAGGACCCTGAACCACCAATATGACT
ACATGTTTGATTGGACGATGTTAAAGCAGAAAGCAGCACAGCAGGCAGCCTCTTCCAGTGGGCAGGGTCAGCAGGCCCAA
ACCCAGACAGGCAAGCAAACTGCAAAAAACAAGAATAATGTGAAAGATAACTAA

Alignment

ORF - retro_nleu_117 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.48 %
• Parental protein coverage: 71.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWC
          EL.VG.KY.L.RKIGSGSFGD.YLG.....GEEVA.KLE..K.KHPQL..ESK.Y...QGGVGIP...W.
Retrocopy ELVVGGKYKLVRKIGSGSFGDVYLGITTTNGEEVAVKLESQKVKHPQLLYESKLYTILQGGVGIPHMHWY

Parental  GAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKK
          G.E.D.NV.V..LLGPSLEDLFNFCSR.F..KTVL.LADQMISRIEY.H..NF.HRD.KPDNFLMG.G..
Retrocopy GQEKDNNVLVIDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTNNFLHRDIKPDNFLMGTGRH

Parental  GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL
          .N....IDFGLAKKYRD.RT.QHIPYRE.K.L.GT.RYASIN.HLGIEQSRRDD.ESLGYV.MYFN..SL
Retrocopy CNKLFLIDFGLAKKYRDNRTRQHIPYREDKHLIGTVRYASINAHLGIEQSRRDDMESLGYVFMYFNRTSL

Parental  PWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG
          PWQGL.A.TK.QKYE.ISEKKMSTP.EVLCKG.P.EF..YLN.CR.LRF...PDY.YLRQLFR.LF....
Retrocopy PWQGLRAMTKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEVPDYMYLRQLFRILFRTLN

Parental  FSYDYVFDWNMLKFGAAR
          ..YDY.FDW.MLK..AA.
Retrocopy HQYDYMFDWTMLKQKAAQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_117 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000011583	1 retrocopy	retro_mmur_10,
Nomascus leucogenys	ENSNLEG00000015080	1 retrocopy	retro_nleu_117 ,
Pongo abelii	ENSPPYG00000011818	1 retrocopy	retro_pabe_170,
Pan troglodytes	ENSPTRG00000014365	1 retrocopy	retro_ptro_7,