RetrogeneDB ID: | retro_nleu_1384 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397291.1:19296499..19297032(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEA1 | ||
Ensembl ID: | ENSNLEG00000000981 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.18 % |
Parental protein coverage: | 59.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DTYVSSFP-RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVR |
...VSS.P..A.S.SDSV..K.REML.AAL.TGDD.I..GADEEELGS.IEEA...E...T.MKYKN.V. | |
Retrocopy | EIFVSSVP<LAQSASDSVQMKYREMLVAALQTGDDCIEMGADEEELGSRIEEAVDPERGSTGMKYKNSVQ |
Parental | SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT |
S.ISNL.DAKNP.LRKN..CGNIPPDL.ARMTAEEMASDELKE..KNLTKEAIREHQ.AKTGGTQ.D..T | |
Retrocopy | SKISNLTDAKNPDLRKNAPCGNIPPDLLARMTAEEMASDELKETHKNLTKEAIREHQKAKTGGTQPDSLT |
Parental | CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC |
.GKCKKKN.T.TQVQ..SA.EPMTTFV.CNE.GN..KFC | |
Retrocopy | YGKCKKKNFTSTQVQACSAGEPMTTFVDCNERGNQQKFC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001247 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014407 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013799 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000009220 | 1 retrocopy | |
Homo sapiens | ENSG00000187735 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023652 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016022 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033813 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000981 | 3 retrocopies |
retro_nleu_1028, retro_nleu_1374, retro_nleu_1384 ,
|
Oryctolagus cuniculus | ENSOCUG00000007474 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000018589 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020251 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000022323 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013661 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021179 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001030 | 1 retrocopy |