RetrogeneDB ID: retro_nleu_1577

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397300.1:6988774..6989467(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GSTO1
• Ensembl ID: ENSNLEG00000015358
• Aliases: None
• Description: None

Sequence

>retro_nleu_1577
ATGTTAGAGGAGTCAGCCAGGAGCCTGGGGAAGGGAAGCACGCCCCTGGGGCTGGTCCCAGAGGGCCTGATCTGCCTCTG
CAGCATGAGGTTCTGCCCGTTTGCTGAGAGGACCCATCTGGTTCTGAAGGCCGAGGGAATCAGGCATGAAGTCACCTATA
TCAACCTGAAAGATAAGCCTGAGTGGTTCTTTAAGAAAAACCCCTTTAGTTTGGTGCCAGTTCTGGAAAACAGTCAGGGT
CAGCTGATCTATGAGTCTGCCATCACCTGTGAGTACTTGGATGAAGCATACTCAGGGAAGAAGCTGTTGCCGGATGACCC
CTATGAGAAAGCTCGCCAGAAGATGGTCTTCGAGTTGTTTTCTACGGTGCCATCTTTGGTAGGAAGCTTCCTTAGAAGCC
AAAATAAGGAAGACGGTGCTGGCCTGAAAGAAGCATTGTGTAAAGAATTTAGCAAGCTAGAGGAGGTTCTGATTAATAAG
AAGAAAACCTTCTATGGTGGCAATTCCATCTCTATGATTGACTACGTCATCTGGCCCTGGTTTGAATGGCTGGAAGCAAT
GAAGTTAAATGAGTGTGTAGACCACACTCCAGAACTTAAACTGTGGATGGCAGCCATGAGGGAAGATCCCACAGTCTCAG
CCCTGCTCACTGGTGTGAAGGACTGGCAAGGTTTCATAGAGCTCTACTTACAG

Alignment

ORF - retro_nleu_1577 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.55 %
• Parental protein coverage: 95.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGESARSLGKGSAPPEPVPEGSIRVYSMRFCPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFG
          M..ESARSLGKGS.P...VPEG.I...SMRFCPFAERT.LVLKA.GIRHEV..INLK.KPEWFFKKNPF.
Retrocopy MLEESARSLGKGSTPLGLVPEGLICLCSMRFCPFAERTHLVLKAEGIRHEVTYINLKDKPEWFFKKNPFS

Parental  LVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRRQNKEDYA
          LVPVLENSQGQLIYESAITCEYLDEAY.GKKLLPDDPYEKA.QKM..ELFS.VPSLVGSF.R.QNKED.A
Retrocopy LVPVLENSQGQLIYESAITCEYLDEAYSGKKLLPDDPYEKARQKMVFELFSTVPSLVGSFLRSQNKEDGA

Parental  GLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDP
          GLKE...KEF.KLEEVL.NKK.TF.GGNSISMIDY.IWPWFE.LEAMKLNECVDHTP.LKLWMAAM.EDP
Retrocopy GLKEALCKEFSKLEEVLINKKKTFYGGNSISMIDYVIWPWFEWLEAMKLNECVDHTPELKLWMAAMREDP

Parental  TVSALLTSEKDWQGFLELYLQ
          TVSALLT..KDWQGF.ELYLQ
Retrocopy TVSALLTGVKDWQGFIELYLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1577 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000018474	1 retrocopy	retro_cjac_295,
Echinops telfairi	ENSETEG00000017967	1 retrocopy	retro_etel_1413,
Homo sapiens	ENSG00000148834	1 retrocopy	retro_hsap_2704,
Gorilla gorilla	ENSGGOG00000005064	1 retrocopy	retro_ggor_24,
Macaca mulatta	ENSMMUG00000015334	1 retrocopy	retro_mmul_142,
Nomascus leucogenys	ENSNLEG00000015358	1 retrocopy	retro_nleu_1577 ,
Pongo abelii	ENSPPYG00000002633	1 retrocopy	retro_pabe_2256,
Pan troglodytes	ENSPTRG00000002925	1 retrocopy	retro_ptro_1825,