>retro_nleu_1626
CTGGCAGTCACAAAGTGGCTGCAAATGGAGTCATTTGTCTTCTCTGAAAACCGTGGTGGTGGTTTGGTAGCCAGTTTTCT
GTTTGATAATGGTGTTCCAGCAGCTTGGGCATTATTTTCCTGGAGCTCAATTCCTAATGATGATGTTTTCCAATTTCTTG
CATATATCTATGATTCAACAAATCTCAACATGAAGAAAGGTCAGCAAAAAGCCAAAATGAAGTTTCTTAATGGAGTTACA
AATGAATACTCTTGGTATCTACTCCCAGGTAGAATGCTAGAGTATAATAACTACATCTGGGCCCAGTGTTTTAAAATTGT
ATTAAAGCTGTCATGCTGTAAATATCCTTGCAAAGGCAAGCACCTATTCCTGTGGAATTATAACAAAGCCTCATTACTTG
AATATATAAAACAGGTGCAGCTAGGTGTAAAGGGTCAAGTTTTTTTTATCAGAATGGAAATCGGCTACCCAATGTGACTG
TGAGAGTCCCAGACAGAAAACATATCTGCACTTAGAGGATCAACAAATTTGGAGCCTATTATCTGGTTCTTTTATCTGGG
TCCGATATAGTACATGTTATAGTCCTTGAACTTCAGCATCTCATAAAGGTAATTATACCAGAGAAATCACAGAACATCAG
TGCTCTTAAGAAGGATACTTTATTTCCATTCCAAGGGCAACTGGACTTTATCCCACTACAAAATCTTTTATACCCTATGA
TTTTTCTATGCAGAAAGTTGCCAAGCCACTCAACTGTAACAAAGCATAGTGTTACTATTTTTAGTGACTCTTTTGCACAT
ATTTTT
ORF - retro_nleu_1626 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.9 % |
Parental protein coverage: |
67.67 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VAVMKWLKTETFVLSANLHGGALVASYPFDNGVQATGALYSRSLTPDDDVFQYLAHTYASRNPNMKKGDE |
| .AV.KWL..E.FV.S.N..GG.LVAS..FDNGV.A..AL.S.S..P.DDVFQ.LA..Y.S.N.NMKKG.. |
Retrocopy | LAVTKWLQMESFVFSEN-RGGGLVASFLFDNGVPAAWALFSWSSIPNDDVFQFLAYIYDSTNLNMKKGQQ |
|
Parental | CKNKMNFPNGVTNGYSWYPLQGGMQDYN-YIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQ |
| .K.KM.F.NGVTN.YSWY.L.G.M..YN.YIWAQCF.I.L.LSCCKYP...K....WN.NKASL.EYIKQ |
Retrocopy | -KAKMKFLNGVTNEYSWYLLPGRMLEYNNYIWAQCFKIVLKLSCCKYPCKGKHLFLWNYNKASLLEYIKQ |
|
Parental | VHLGV-KGQVFD-QNGNPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINITVPGYDPHLTKVII |
| V.LGV.KG.....QNGN.LPNV.V.V.DRKHIC..R.NK.G.YYL.LL.GS.I....V.....HL.KVII |
Retrocopy | VQLGV<KGSXXXXQNGNRLPNVTVRVPDRKHICT*RINKFGAYYLVLLSGSDIVHVIVLELQ-HLIKVII |
|
Parental | PEKSQNFSALKKDILLPFQEQLDSIPVSNPSCPMIPLYRNLPDHSAATKPSLFLFLVSLLHIF |
| PEKSQN.SALKKD.L.PFQ.QLD.IP..N...PMI.L.R.LP.HS..TK.S...F..S..HIF |
Retrocopy | PEKSQNISALKKDTLFPFQGQLDFIPLQNLLYPMIFLCRKLPSHSTVTKHSVTIFSDSFAHIF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1626 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.