RetrogeneDB ID:

retro_nleu_1626

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397301.1:12661507..12662313(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CPM
Ensembl ID:ENSNLEG00000003782
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1626
CTGGCAGTCACAAAGTGGCTGCAAATGGAGTCATTTGTCTTCTCTGAAAACCGTGGTGGTGGTTTGGTAGCCAGTTTTCT
GTTTGATAATGGTGTTCCAGCAGCTTGGGCATTATTTTCCTGGAGCTCAATTCCTAATGATGATGTTTTCCAATTTCTTG
CATATATCTATGATTCAACAAATCTCAACATGAAGAAAGGTCAGCAAAAAGCCAAAATGAAGTTTCTTAATGGAGTTACA
AATGAATACTCTTGGTATCTACTCCCAGGTAGAATGCTAGAGTATAATAACTACATCTGGGCCCAGTGTTTTAAAATTGT
ATTAAAGCTGTCATGCTGTAAATATCCTTGCAAAGGCAAGCACCTATTCCTGTGGAATTATAACAAAGCCTCATTACTTG
AATATATAAAACAGGTGCAGCTAGGTGTAAAGGGTCAAGTTTTTTTTATCAGAATGGAAATCGGCTACCCAATGTGACTG
TGAGAGTCCCAGACAGAAAACATATCTGCACTTAGAGGATCAACAAATTTGGAGCCTATTATCTGGTTCTTTTATCTGGG
TCCGATATAGTACATGTTATAGTCCTTGAACTTCAGCATCTCATAAAGGTAATTATACCAGAGAAATCACAGAACATCAG
TGCTCTTAAGAAGGATACTTTATTTCCATTCCAAGGGCAACTGGACTTTATCCCACTACAAAATCTTTTATACCCTATGA
TTTTTCTATGCAGAAAGTTGCCAAGCCACTCAACTGTAACAAAGCATAGTGTTACTATTTTTAGTGACTCTTTTGCACAT
ATTTTT

ORF - retro_nleu_1626 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.9 %
Parental protein coverage: 67.67 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVAVMKWLKTETFVLSANLHGGALVASYPFDNGVQATGALYSRSLTPDDDVFQYLAHTYASRNPNMKKGDE
.AV.KWL..E.FV.S.N..GG.LVAS..FDNGV.A..AL.S.S..P.DDVFQ.LA..Y.S.N.NMKKG..
RetrocopyLAVTKWLQMESFVFSEN-RGGGLVASFLFDNGVPAAWALFSWSSIPNDDVFQFLAYIYDSTNLNMKKGQQ
ParentalCKNKMNFPNGVTNGYSWYPLQGGMQDYN-YIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQ
.K.KM.F.NGVTN.YSWY.L.G.M..YN.YIWAQCF.I.L.LSCCKYP...K....WN.NKASL.EYIKQ
Retrocopy-KAKMKFLNGVTNEYSWYLLPGRMLEYNNYIWAQCFKIVLKLSCCKYPCKGKHLFLWNYNKASLLEYIKQ
ParentalVHLGV-KGQVFD-QNGNPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINITVPGYDPHLTKVII
V.LGV.KG.....QNGN.LPNV.V.V.DRKHIC..R.NK.G.YYL.LL.GS.I....V.....HL.KVII
RetrocopyVQLGV<KGSXXXXQNGNRLPNVTVRVPDRKHICT*RINKFGAYYLVLLSGSDIVHVIVLELQ-HLIKVII
ParentalPEKSQNFSALKKDILLPFQEQLDSIPVSNPSCPMIPLYRNLPDHSAATKPSLFLFLVSLLHIF
PEKSQN.SALKKD.L.PFQ.QLD.IP..N...PMI.L.R.LP.HS..TK.S...F..S..HIF
RetrocopyPEKSQNISALKKDTLFPFQGQLDFIPLQNLLYPMIFLCRKLPSHSTVTKHSVTIFSDSFAHIF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1626 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Nomascus leucogenys ENSNLEG00000003782 1 retrocopy
retro_nleu_1626 ,



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