RetrogeneDB ID: retro_nleu_1857

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397313.1:8253756..8254314(+)
• Located in intron of: ENSNLEG00000004297

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AKR7A2
• Ensembl ID: ENSNLEG00000007852
• Aliases: None
• Description: None

Sequence

>retro_nleu_1857
AATCCATTGTTTGGGAACTCCCTGAAACCTGACAGTCTCCGGTTCCAGCTGGAGATGTCACTGAAGTGGCTGCAGTGTCC
CCGAGTGGACCTCTTCCACCTGCTCATGCCAGACCACAGCACCCCGGTGGAAGAGACACTGCGTGCCCGCCACCAGCTGC
ACCAGGAGGGCAAGTTCGTGGATCTTGGCCTCTCCAACTATGCCGCCTGGGAAGTGGCCAAGATCTGTACCCTCTGCAAG
AGCAACGGCTGGATCCTGTCCACTGTGTACCAGGGCATGTACAATGCCACCACCCAGCAAGTGGAAACGGAGCTCTTCCC
CTGCCTCAGGCACTTTGGACTGAGGTTCTATGCCTTCAACCCTCTGGCTGGTGGCCTGCTGACTGGCAAGTACAAGTATG
AGGACAAGGATGGGAAACAGCCCATGGGCCGCTTCTTTGGGACTCAGTAGGCAGAGATCTACAGGAATCGCTTCTGGAAG
AAGCACCACTGCGATGGCATTGCCCTGGTGGGGAAGACCCTGCAGGCCGTGTATAGCACCAGCGCCCCCAGGATGAGC

Alignment

ORF - retro_nleu_1857 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.65 %
• Parental protein coverage: 51.96 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SPWDGKSLKPDSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLRACHQLHQEGKFMELGLSNYASW
          .P..G.SLKPDS.R.QLE.SLK.LQCP.VDLF.L..PDH.TPVEETLRA.HQLHQEGKF..LGLSNYA.W
Retrocopy NPLFGNSLKPDSLRFQLEMSLKWLQCPRVDLFHLLMPDHSTPVEETLRARHQLHQEGKFVDLGLSNYAAW

Parental  EVAEICTLCKSNGWILPTVYQGMYNATTRQVETELFPCLRHFGLRFYAYNPLAGGLLTGKYKYEDKDGKQ
          EVA.ICTLCKSNGWIL.TVYQGMYNATT.QVETELFPCLRHFGLRFYA.NPLAGGLLTGKYKYEDKDGKQ
Retrocopy EVAKICTLCKSNGWILSTVYQGMYNATTQQVETELFPCLRHFGLRFYAFNPLAGGLLTGKYKYEDKDGKQ

Parental  PMGRFFGNSWAETYRNRFWKEHHFEGIALVENALQAAYGASAPSMT
          PMGRFFG...AE.YRNRFWK.HH..GIALV...LQA.Y..SAP.M.
Retrocopy PMGRFFGTQ*AEIYRNRFWKKHHCDGIALVGKTLQAVYSTSAPRMS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1857 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000162482	1 retrocopy	retro_hsap_208,
Macaca mulatta	ENSMMUG00000006891	1 retrocopy	retro_mmul_2629,
Nomascus leucogenys	ENSNLEG00000007852	1 retrocopy	retro_nleu_1857 ,
Pongo abelii	ENSPPYG00000001793	1 retrocopy	retro_pabe_431,
Pan troglodytes	ENSPTRG00000000265	1 retrocopy	retro_ptro_336,