RetrogeneDB ID: | retro_nleu_1861 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397313.1:12134115..12134598(+) | ||
Located in intron of: | ENSNLEG00000005162 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSNLEG00000004194 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MPLRGPSDA-CFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALAAPVEAGMMF |
MPLRGPSD..CFTTFLMSSY.AGFSR.QVR..T.TL.VGTRKAMPVSF.FSSGMTLPT.LA.PVEAGMMF | |
Retrocopy | MPLRGPSDT<CFTTFLMSSYVAGFSRQQVRFMTNTLSVGTRKAMPVSFLFSSGMTLPTGLAVPVEAGMMF |
Parental | WRAPRPSRHS-FPEGP-STVFWVAVMAWTVEPHPSTIPKLSWMTLARGAKQLVVQEALLQTKRLLSYFSW |
WRA.R.SRHS.FP.G....VFWVAVM.WTV....S..PKLSWM.LA.GAK.L..QEALL....LLSYFSW | |
Retrocopy | WRALRLSRHS<FPGGA<HPVFWVAVMVWTVVMSASMVPKLSWMILAWGAKRLMAQEALLTILGLLSYFSW |
Parental | FTPMTNMGASAEGAEMMTLLAPPCK |
F.P.TNMGASAEGAEMMT.LAPPCK | |
Retrocopy | FKPITNMGASAEGAEMMTPLAPPCK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Nomascus leucogenys | ENSNLEG00000004194 | 41 retrocopies |
retro_nleu_1019, retro_nleu_1162, retro_nleu_1316, retro_nleu_1514, retro_nleu_154, retro_nleu_1587, retro_nleu_1596, retro_nleu_1656, retro_nleu_1730, retro_nleu_1731, retro_nleu_1750, retro_nleu_186, retro_nleu_1861 , retro_nleu_1863, retro_nleu_1864, retro_nleu_1865, retro_nleu_1866, retro_nleu_1867, retro_nleu_1869, retro_nleu_1945, retro_nleu_206, retro_nleu_2166, retro_nleu_2174, retro_nleu_2276, retro_nleu_2432, retro_nleu_2467, retro_nleu_2671, retro_nleu_2684, retro_nleu_2745, retro_nleu_2980, retro_nleu_306, retro_nleu_405, retro_nleu_438, retro_nleu_459, retro_nleu_489, retro_nleu_541, retro_nleu_599, retro_nleu_626, retro_nleu_783, retro_nleu_810, retro_nleu_995,
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